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Table 4 Performance comparison of transcriptome assembly between Cufflinks and MaLTA for Ion Torrent HeLa datasets.

From: Transcriptome assembly and quantification from Ion Torrent RNA-Seq data

  DID-413 DID-416 GOG-382
  # assembled transcripts # confirmed annotated transcripts # assembled transcripts # confirmed annotated transcripts # assembled transcripts # confirmed annotated transcripts
MaLTA 15,109 4,000 9,908 2,807 16,143 4,395
Cufflinks 12,100 1,228 7,419 759 13,887 1,557
  1. Assembled transcripts are matched against UCSC hg18 reference annotations.