Table 4 Performance comparison of transcriptome assembly between Cufflinks and MaLTA for Ion Torrent HeLa datasets.
From: Transcriptome assembly and quantification from Ion Torrent RNA-Seq data
| Â | DID-413 | DID-416 | GOG-382 | |||
|---|---|---|---|---|---|---|
| Â | # assembled transcripts | # confirmed annotated transcripts | # assembled transcripts | # confirmed annotated transcripts | # assembled transcripts | # confirmed annotated transcripts |
MaLTA | 15,109 | 4,000 | 9,908 | 2,807 | 16,143 | 4,395 |
Cufflinks | 12,100 | 1,228 | 7,419 | 759 | 13,887 | 1,557 |