Skip to main content

Table 1 Enrichment of proteomics data in expression level-grouped transcriptomics data.

From: Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells - a benchmarking study

Threshold Number of proteins transcripts Number of mapped % of proteins mapped to transcript data % of all protein detected (within 4,957)
≥2.8 13,187 3,989 27.14% 80.47%
≥6.0 7,757 3,579 46.14% 72.20%
<6.0 5,430 410 7.55% 8.27%
Absent from NA 968 NA 19.52% transcript set
  1. RNA expression level 2.8 and 6.0 were used as thresholds.