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Table 3 The overlapping numbers of mapped genes from 50-cell sample, detected proteins in all proteomic runs to transcriptomics data.

From: Pathway analysis and transcriptomics improve protein identification by shotgun proteomics from samples comprising small number of cells - a benchmarking study

   # mapped genes Presence in transcriptomics data
50-cell sample Run 1
Run 2
Run 3
Intersection
4,231
4,019
4,137
3,561
3,519 (83.17%)
3,344 (83.20%)
3,437 (83.08%)
2,967 (83.32%)
  Twice 4,119 3,423 (83.10%)
  Union 4,273 3,560 (83.31%)
   # detected proteins  
All proteomic runs 4,957 3,989 (80.50%)