Table 4 Memory consumption in GB of the seven assemblers against the five fungal pathogenes.
From: Assessment of de novoassemblers for draft genomes: a case study with fungal genomes
Dataset | ABySS | IDBA-UD | Minia | SOAP | SPAdes | Sparse | Velvet |
|---|---|---|---|---|---|---|---|
BcDw1 | 5.47(3) | 5.91(4) | 0.20(1) | 22.2(6) | 42(7) | 1.68(2) | 18.3(5) |
UCRNP2 | 8.86(3) | 12.1(4) | 0.28(1) | 19.2(5) | 49.4(7) | 2.54(2) | 28.5(6) |
UCRPA7 | 5.79(3) | 6.89(4) | 0.19(1) | 27.7(6) | 36.9(7) | 1.99(2) | 23.2(5) |
UCREL1 | 5.98(3) | 7.37(4) | 0.18(1) | 27(6) | 46(7) | 1.83(2) | 22.3(5) |
PST21 | 19.5(4) | 10.6(3) | 0.31(1) | 36.6(6) | ------ | 2.69(2) | 30.9(5) |