Table 6 Quality results of all assemblies against the five fungal pathogens at the scaffolds level.
From: Assessment of de novoassemblers for draft genomes: a case study with fungal genomes
Dataset | ABySS | IDBA-UD | SOAP | SPAdes | Sparse | Velvet | df_1 |
|---|---|---|---|---|---|---|---|
BcDw1 | 2.65 | 1.71 | 3.63 | 2.74 | 3.96 | 2.98 | 3.07 |
UCRNP2 | 2.77 | 2 | 3.73 | 3.66 | 3.7 | 3.19 | 2.2 |
UCRPA7 | 2.75 | 1.35 | 4.37 | 2.13 | 4.43 | 3.43 | 3.27 |
UCREL1 | 3.43 | 1.53 | 4.75 | 2.57 | 4.23 | 2.42 | 3.43 |
PST21 | 3.38 | 1.86 | 3.85 | ------ | 2.86 | 2.46 | ------ |