Table 2 Genetic variants for known traits and diseases.

21070277 [29]

1

74,842,283

ACTN2

Racing performance

A>G

A/A

20353955 [30]

1

108,249,293

TRPM1

Leopard complex spotting and congenital stationary night blindness

C>T

C/C

17498917 [31]

1

128,056,148

PPIB

Hereditary equine regional dermal asthenia

G>A

G/G

20419149 [32]

1

138,235,715

MYO5A

Lavender foal syndrome

Del 1 bp

neg

21070277 [29]

3

32,772,871

COX4I1

Racing performance

C>T

T/C

8995760 [33]

3

36,259,552

MC1R

Chestnut coat color

C>T

C/C

11086549 [34]

3

36,259,554

MC1R

Chestnut coat color

G>A

G/G

16284805 [35]

3

77,735,520

KIT

Sabino spotting

A>T

A/A

18253033 [36]

3

77,740,163

KIT

Tobiano spotting pattern

G>A

G/G

22808074 [37],

22615965 [38]

3

105,547,002

LCORL, NCAPG

Large body size

T>C

T/T

21070277 [29]

4

40,279,726

ACN9

Racing performance

C>T

T/T

12230513 [39]

5

20,256,789

LAMC2

Junctional epidermolysis bullosa

Ins C

neg

17029645 [40]

6

73,665,304

PMEL17

Silver coat color

G>A

G/G

22808074 [37]

6

81,481,065

HMGA2

Large body size

C>T

T/T

19016681 [41]

8

45,603,643- 45,610,231

LAMA3

Junctional epidermolysis bullosa

Del 6589

neg

9103416 [42]

9

35,528,429

DNAPK

Severe combined immunodeficiency

Del 5 bp

neg

22615965 [38]

9

74,795,013

ZFAT

Wither height

C>T

C/C

22808074 [37]

9

75,550,059

ZFAT

Large body size

C>T

C/C

15318347 [43]

10

9,554,699

RYR1

Malignant hyperthermia

C>G

C/C

21059062 [44]

10

15,884,567

CKM

Racing performance

G>A

G/G

18358695 [45]

10

18,940,324

GYS1

Polysaccharide storage myopathy

C>T

C/C

7623088 [46]

11

15,500,439

SCN4A

Equine hyperkalemic periodic paralysis

C>T

C/C

22808074 [47]

11

23,259,732

LASP1

Large body size

G>A

A/A

21070269 [47]

14

3,761,254

PROP1

Dwarfism

G>C

G/G

18802473 [48]

14

26,701,092

SLC36A1

Champagne dilution

G>C

G/G

17901700 [49]

14

27,991,841

SCL26A2

Autosomal recessively

inherited chondrodysplasia

A>G

G/G

9580670 [50]

17

50,624,658

EDNRB

Lethal white foal syndrome

GA>CT

GA/GA

20932346 [51]

18

66,493,737

MSTN

Optimum racing performance

T >C

T/T

12605854 [52]

21

30,666,626

SLC45A2

Cream coat color

G>A

G/G

21059062 [44]

22

22,684,390

COX4I2

Racing performance

C>T

C/C

11353392 [53]

22

25,168,567

ASIP

Black and bay color

Del 11 bp

Neg

22932389 [54]

23

22,999,655

DMRT3

Pattern of locomotion (altered gait)

C>A

A/C

18641652 [55]

25

6,574,013-

6,581,600

STX17

Gray coat color

Dup 4600

neg