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Table 8 Predicting values of some peptides by MHC2SK, NN-algin and MHC2MIL on HLA-DQA1_0501-DQB1_0201. IC50_t is the true IC50(nM) for each peptide. IC50_p is the predicting value.

From: MHC2MIL: a novel multiple instance learning based method for MHC-II peptide binding prediction by considering peptide flanking region and residue positions

peptide

IC50_t

IC50_p by MHC2SK

IC50_p by NN-algin

IC50_p by MHC2MIL

EDVGYPIIIDQKYCP

849.6

1245.3

1764.5

868.2

FEAMYLGTCQTLTPM

670.8

620.9

1473.4

667.8

LGHRDALEDDLLNRN

1874.1

2275.0

775.5

1844.2

QLVPKLDEVYNAAYN

1478.8

3770.5

994.7

1417.3

SVLLVVALFAVFLGS

748.1

1072.4

2064.6

745.0