Table 1 Statistics on adjacencies recover by ARt-DeCo on 7 tetrapods dataset with different number of simulated breaks
From: Ancestral gene synteny reconstruction improves extant species scaffolding
#Breaks (n) | 50 | 150 | 250 | 350 | 450 | 550 |
|---|---|---|---|---|---|---|
T P | 283 | 829 | 1364 | 1895 | 2418 | 2922 |
F P | 14 | 16.5 | 21 | 24.5 | 32 | 40 |
True positive | 88.64% | 89.98% | 89.38% | 89.00% | 88.32% | 87.35% |
False positive | 4.40% | 1.78% | 1.39% | 1.15% | 1.18% | 1.19% |
#Breaks (n) | 650 | 750 | 850 | 950 | 1050 | |
T P | 3431 | 3917 | 4398 | 4875 | 5338 | |
F P | 46 | 57 | 63 | 73.566 | 83 | |
True positive | 86.84% | 85.87% | 85.12% | 84.38% | 83.58% | |
False positive | 1.17% | 1.25% | 1.22% | 1.27% | 1.30% |