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Table 1 Topological (avg: d a , max: d m ) & Temporal Distances (avg: t a , max: t m ) of the inferred pseudogenization vertices from the true (synthetic analysis)

From: Gene-pseudogene evolution: a probabilistic approach

Family mean(d a ) mean(t a ) max(d m ) mean(d m ) max(t m ) mean(t m ) dN/dS Kappa Depth
1 0 0.03 0 0 0.13 0.03 0.3 0.2 1
2 1.12 0.34 3 3 0.86 0.68 0.3 0.8 6
3 0 0.03 0 0 0.14 0.04 0.3 1.2 2
4 0 0.22 0 0 0.63 0.5 0.3 1.6 1
5 0.56 0.12 3 3 0.33 0.24 0.3 2 4
6 1.3 0.13 3 3 0.4 0.23 0.6 0.2 4
7 0 0.03 0 0 0.19 0.03 0.6 0.8 1
8 0 0.08 0 0 0.26 0.15 0.6 1.2 3
9 0.1 0.04 1 0.1 0.12 0.04 0.6 1.6 2
10 0 0.16 0 0 0.31 0.25 0.6 2 7
11 0 0.14 0 0 0.28 0.2 0.8 0.2 2
12 0 0.05 0 0 0.23 0.08 0.8 0.8 3
13 0.35 0.32 1 0.69 0.54 0.38 0.8 1.2 6
14 0 0.03 0 0 7.0 0.03 0.8 1.6 3
17 0.66 0.41 1 1 0.76 0.73 1.2 0.8 3
18 0.88 0.39 1 0.88 0.67 0.43 1.2 1.2 5
19 0 0.15 0 0 0.21 0.15 1.2 1.6 1
20 0 0.11 0 0 0.27 0.22 1.2 2 3
21 0.33 0.25 1 1 0.65 0.53 1.8 0.2 3
22 1.4 0.42 4 4 0.81 0.78 1.8 0.8 5
23 1.03 0.11 3 1.23 0.3 0.14 1.8 1.2 4
24 0.67 0.27 1 1 0.67 0.43 1.8 1.6 3
25 0.04 0.13 3 0.04 0.45 0.13 1.8 2 6