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Table 1 Identified exon modules display distinct functional profiles

From: Reconstruction of composite regulator-target splicing networks from high-throughput transcriptome data

Module

Top Enriched Go Terms(pval<1e-3)

Interacting Genes (pval<1e-3)

Top Regulators

Top Targets (non-RBPs)

1

instal larval or pupal morphogenesis, metamorphosis, post-embryonic morphogenesis

DP, hp, Rbf, slpr, Myd88

Fib:2, CG6995:19, eIF-4a:6, sm:3, CG17838

CG17273:3, CSN3:4, CG9797:2, Abi:4, Akap200:5

2

organ development, instar larval or pupal development, post-embryonic morphogenesis

fz2, E2f, hop, hep, dco

Rbp2:3, Patr-1:3, dom:4, pum:3 CG7185:6

Trf2:4, CG3662:4, CG2943:7, Arf51F:4, CG2947:5

3

regulation of cellular process, organ development, generation of neurons

Su(H), Notch, mew, E2f, mys

(2)d:5 gw:52, CG30122:7 CG4119:3 Sxl:15

CG8116:2, CG42551:3, CG9132:2, Spt6:3, Gprk1:12

4

organ development, locomotion, neuron di_erentiation

Pc, mew, hop, ph-d, w

CG11266:4 su(w[a]):6 Dcp2:4, Zn72D:4, Psi:3

RhoGAP71E:5, CG4699:10, prod:2, Abl:6, l(1)G0232:6

5

organ morphogenesis, sensory organ development, epithelium development

rux, Pvf1, sli, Egfr, CycB

me31B:3, msi:6, CG11133, spn-E, xmas-2

CG12424:5, CG16791:13, tutl:6, LanB2:8, CG3907:3

6

regulation of primary metabolic process, regulation of biosynthetic process, regulation of gene expression

trx, w, Pc, arm, mor

CG6995:14 CG1646:10 Psi:5, brm:5, qkr58E-2:4

CG1244:10, CG42245:5, Syb:2 slmb:4, CG42614:12

7

imaginal disc development, wing disc morphogenesis, post-embryonic appendage morphogenesis

wupA, fz2, NiPp1, Tm2, Prm

CG34362:8, CG13124:10, shot:6, CG3209:4 CG8547:5

stv:8, CG15105:6, CG15105:9, CG34398:13, CG13188:6

8

 

Rac1, Rac2

Smg6:5, Chd1:2, snRNA:U5:38ABb, snRNA:U5:14B, snRNA:U5:23D

gammaCop:6, Nat1:2 Cip4:8, sec24:4, Utx:11

9

sarcomere, myo_bril, tissue development

Mhc, Dp, arm, l(2)gl, Rbf

Sxl:14, AGO1:6, Nop56:2, CG6209, SF2:3

CG42783:7, lqf:12, Zasp:10, CG42446:4, CG7188:2

10

 

Rho1, Pvf1, Taf1, Egfr, Ras85D

CG13124:7, CG4266:2, CG3558:4

CG15609:7, CG8677:4, CG2991:5, RhoGEF2:21, Pen:4

Network

anatomical structure morphogenesis, system development, protein-binding, multicellular organismal development

Sb, Rho1, Pc, mew, baz

CG30122:7, (2)d:5, pUf68:5, CG4119:3, gw:52

stv:8, psq:17, CG8116:2, l(1)G0232:6, trx:17

  1. The table shows the gene enrichment analysis, top interacting genes, putative regulators and targets for the 10 largest identified exon modules. GO analysis and analysis of genetic and physical interactions was carried out using the FlyMine database [33]. Top regulators and targets are listed in order according to their composite centrality scores.