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Table 3 FDR of CRanker on test set.

From: An adaptive classification model for peptide identification

 

TP(full/half/none)

FP(full/half/none)

FDR

t e s t t o t a l

ups1

253(192/57/4)

7(6/1/0)

5.38%

43.26%

yeast

730(699/30/1)

18(12/6/0)

4.81%

50.17%

tal08

8040(7299/560/181)

200(137/39/24)

4.85%

49.03%

orbit-mips

16940(13298/3370/272)

440(279/121/40)

5.06%

49.65%

orbit-nomips

18037(13918/3764/355)

459(257/144/58)

4.96%

49.63%

velos-mips

61001(54732/6006/252)

1537(1050/406/81)

4.92%

49.72%

velos-nomips

89449(66413/21364/1672)

2297(1250/937/110)

5.01%

50.00%

  1. t e s t t o t a l : the ratios of PSMs identified on test set and whole dataset. FDR: false discovery rate.