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Figure 5 | BMC Genomics

Figure 5

From: Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data

Figure 5

Precision, recall and F -score with respect to the accuracy of shared transcript reconstruction in the test on mouse against rat from Oases and from Mutual over different values of k and k -mer coverage cutoff c (represented by k _ c ) and over different e -value cutoffs 10−7 and 10−20 . Precision is defined to be the fraction of query positions from predicted shared transcripts that are included in BLAST alignments from each organism to its known transcriptome database. Recall is defined to be the fraction of subject positions from database sequences that are included in BLAST alignments from each organism to its known transcriptome database. F-score is the harmonic mean of precision and recall.

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