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Table 6 Comparisons of the number of top unique BLAST hits to different transcripts from each set of predicted shared transcripts in each organism to its known transcriptome database in the test on mouse against human.

From: Heuristic pairwise alignment of de Bruijn graphs to facilitate simultaneous transcript discovery in related organisms from RNA-Seq data

10−7

mouse

human

10−20

mouse

human

k_c

Oases

Mutual

Oases

Mutual

k_c

Oases

Mutual

Oases

Mutual

25_3

7090

7474 (+384)

7123

7548 (+425)

25_3

6169

6402 (+233)

6317

6539 (+222)

25_5

5308

5392 (+84)

5244

5318 (+74)

25_5

4666

4700 (+34)

4679

4696 (+17)

25_10

2781

2818 (+37)

2591

2612 (+21)

25_10

2452

2476 (+24)

2376

2385 (+9)

31_3

5490

5647 (+157)

5198

5387 (+189)

31_3

4421

4557 (+136)

4416

4547 (+131)

31_5

3918

3971 (+53)

3662

3732 (+70)

31_5

3221

3275 (+54)

3180

3222 (+42)

31_10

1796

1805 (+9)

1573

1594 (+21)

31_10

1531

1540 (+9)

1403

1410 (+7)

  1. Notations are the same as in Table 5.