Table 1 The correlation to microarray fold change calculations, and the numbers of differentially expressed isoforms confirmed by microarray measurements among the top ranked isoforms.
From: Accurate inference of isoforms from multiple sample RNA-Seq data
Top isoforms | 10 | 50 | 100 | 200 | |
|---|---|---|---|---|---|
PCC | ISP | 0.95 | 0.86 | 0.87 | 0.86 |
| Â | Cuffmerge | 0.89 | 0.82 | 0.82 | 0.81 |
confirmed (p < 0.05) | ISP | 9 | 45 | 94 | 170 |
| Â | Cuffmerge | 8 | 43 | 82 | 148 |
confirmed (p < 0.001) | ISP | 8 | 35 | 77 | 135 |
| Â | Cuffmerge | 7 | 32 | 64 | 108 |