Skip to main content

Advertisement

Table 1 The correlation to microarray fold change calculations, and the numbers of differentially expressed isoforms confirmed by microarray measurements among the top ranked isoforms.

From: Accurate inference of isoforms from multiple sample RNA-Seq data

Top isoforms 10 50 100 200
PCC ISP 0.95 0.86 0.87 0.86
  Cuffmerge 0.89 0.82 0.82 0.81
confirmed (p < 0.05) ISP 9 45 94 170
  Cuffmerge 8 43 82 148
confirmed (p < 0.001) ISP 8 35 77 135
  Cuffmerge 7 32 64 108