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Table 4 GO IDs where eQTL effect size for Adjusted Haplotype Conditional Entropy outside of the 90% confidence interval from permutation.

From: Conditional entropy in variation-adjusted windows detects selection signatures associated with expression quantitative trait loci (eQTLs)

Gene Ontology Mangravite 2012: βH|H ± σH|H Montgomer y'10 Exon: βH|H ± σH|H Montgomer y '10 Trspt: βH|H ± σH|H Schadt 2007: βH|H ± σH|H Stranger 2007: βH|H ± σH|H Veyrieras 2008: βH|H ± σH|H Zeller 2010: βH|H ± σH|H
Negative Effect Sizes
GO:0006367 -0.099 ± 0.055 0.186 ± 0.086 -0.402 ± 0.592 0.137 ± 0.255 -1.600 ± 1.200 -0.001 ± 0.172 -0.048 ± 0.060
GO:0006396 -0.112 ± 0.041 -0.066 ± 0.065 -0.207 ± 0.109 -0.0001 ± 0.134 -0.160 ± 0.069 -0.049 ± 0.074 -0.050 ± 0.035
GO:0008544 no genes -0.013 ± 0.125 no genes -1.200 ± 0.933 no genes -0.043 ± 0.126 0.032 ± 0.043
GO:0042742 -0.373 ± 0.105 -0.140 ± 0.111 -0.006 ± 0.249 -0.055 ± 0.180 -0.107 ± 0.123 -0.068 ± 0.132 0.019 ± 0.056
Large Positive Effect Sizes
GO:0001501 0.128 ± 0.047 0.158 ± 0.075 0.290 ± 0.083 0.006 ± 0.127 0.196 ± 0.330 0.139 ± 0.094 0.039 ± 0.039
GO:0006869 1.144 ± 0.643 0.119 ± 0.069 -0.037 ± 0.011 -0.074 ± 0.124 0.455 ± 0.676 0.066 ± 0.100 0.018 ± 0.037
GO:0006936 0.480 ± 0.076 -0.124 ± 0.052 -0.052 ± 0.116 0.084 ± 0.109 0.629 ± 0.262 0.304 ± 0.082 0.010 ± 0.030
GO:0007186 0.657 ± 0.452 0.309 ± 0.209 0.090 ± 0.259 no genes 0.771 ± 0.319 -0.143 ± 0.231 -0.067 ± *0.108
GO:0009653 0.010 ± 0.033 0.040 ± 0.061 0.414 ± 0.194 0.084 ± 0.100 0.322 ± 0.097 0.060 ± 0.044 0.037 ± 0.035
GO:0016567 0.185 ± 0.042 0.040 ± 0.071 -0.031 ± 0.0112 -0.322 ± 0.239 0.297 ± 0.059 0.113 ± 0.047 0.038 ± 0.040
GO:0018108 0.277 ± 0.049 0.027 ± 0.086 0.048 ± 0.094 0.031 ± 0.128 0.465 ± 0.119 0.175 ± 0.078 0.026 ± 0.026
GO:0051056 0.185 ± 0.044 0.030 ± 0.055 -0.006 ± q0.173 -0.136 ± 0.169 0.218 ± 0.103 0.333 ± 0.111 -0.033 ± 0.039
  1. Each row corresponds to GO ID, and each cell gives the logistic-scale effect size (β) and standard error (σ), for the Adjusted Haplotype Conditional Entropy (H|H) for eQTLs in genes within that GO category from a conditional logistic regression under Model 6. A bold cell indicates a term that is contributing to membership in the corresponding group; a red italicized cell indicates a term that is pointing in the opposite direction.