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Table 1 Number of simple sequence repeats of given structure in the chromosome of R. solanacearum GMI1000

From: Simple sequence repeats and compositional bias in the bipartite Ralstonia solanacearum GMI1000 genome

 

Motif length

No. of repeats

1

2

3

4

5

6

7

8

9

10

Total

   3

98068-

12307+

3712+

90

21

11

1

-

3

1

114214-

   4

17943-

2122+

213+

-

-

-

-

-

-

-

20278-

   5

4053-

277

17

-

-

-

-

-

2

-

4349-

   6

859-

18

-

-

1

-

-

1

1

-

880-

   7

199-

3

-

-

1

1

-

-

1

-

205-

   8

45-

-

-

-

-

-

-

-

-

-

45-

   9

14-

-

-

-

-

-

-

-

-

-

14-

   10

2

-

-

-

-

-

-

-

-

-

2

   11

4

-

-

-

-

-

-

-

-

-

4

   12

-

-

-

-

-

-

-

-

-

-

-

   13

2

-

-

-

-

-

-

-

-

-

2

   Total

121189-

14727+

3942+

90

23

12

1

1

7

1

139993+

  1. + significantly overrepresented compared to mean frequencies in computer-generated randomised genomes (P < 0.001) - significantly underrepresented compared to mean frequencies in computer-generated randomised genomes (P < 0.001)
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BMC Genomics

ISSN: 1471-2164

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