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Table 2 Number of simple sequence repeats of given structure in the megaplasmid of R. solanacearum GMI1000

From: Simple sequence repeats and compositional bias in the bipartite Ralstonia solanacearum GMI1000 genome

 

Motif length

No. of repeats

1

2

3

4

5

6

7

8

9

10

Total

   3

57345-

6440

1986+

49

10

8

-

3

-

-

65841-

   4

11216-

1096

108+

2

1

4

2

2

2

-

12433-

   5

2560-

146

10

-

-

2

-

3

-

-

2721-

   6

529-

9

1

-

-

2

-

1

-

-

542-

   7

141-

1

-

-

-

-

-

1

-

-

143

   8

41-

1

-

-

-

-

-

-

-

-

42-

   9

11

-

-

-

-

-

-

-

-

-

11

   10

2

-

-

-

-

-

-

-

-

-

2

   11

1

-

-

-

-

-

-

-

-

-

1

   Total

71846-

7693

2105+

51

11

16

2

4

8

0

81736

  1. + significantly overrepresented compared to mean frequencies in computer-generated randomised genomes (P < 0.001) - significantly underrepresented compared to mean frequencies in computer-generated randomised genomes (P < 0.001)
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BMC Genomics

ISSN: 1471-2164

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