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Table 1 List of Probe Set IDs for newly identified genes (Class C) and unresolved genes (Class B)

From: Identification of nutrient partitioning genes participating in rice grain filling by singular value decomposition (SVD) of genome expression data

a) Class C Description b) Class B Description
OS006543_at YNT1_ANASP Q05067 ANABAENA SP. (STRAIN PCC 7120). HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN IN NTCA/BIFA 3 REGION(ORF1) (FRAGMENT). OS017582.1_r_at gi|7267708| sucrose-phosphate synthase-like protein [Arabidopsis thaliana]
OS004712.1_at gi|4467848| ADP-glucose pyrophosphorylase large subunit [Hordeum vulgare] OS019628.1_at gi|7576210| palmitoyl-protein thioesterase precursor-like [Arabidopsis thaliana]
OS007703.1_at gi|4467144| putative phosphatidylinositol synthase [Arabidopsis thaliana] OS000739_at gi|5734442| hexose transporter [Lycopersicon esculentum]
OS017116_at gi|7108597|AF129478_1 K+ transporter HAK5 [Arabidopsis thaliana] OS012020_i_at ABCX_PORPU P51241 PORPHYRA PURPUREA. PROBABLE ATP-DEPENDENT TRANSPORTER YCF16.
OS000501_at gi|322850|PC1257 alpha-amylase (EC 3.2.1.1) (clone alphaAmy8-C) – rice (fragment) OS001622.1_r_at gi|169767| alpha-amylase
OS022287_at PA2L_VIPAA P17935 VIPERA AMMODYTES AMMODYTES (WESTERN SAND VIPER). PHOSPHOLIPASE A2 HOMOLOG, AMMODYTIN L PRECURSOR. OS020548.1_at AMYG_NEUCR P14804 NEUROSPORA CRASSA. GLUCOAMYLASE PRECURSOR
OS007631.1_at PSS_METJA Q58609 METHANOCOCCUS JANNASCHII. CDP-DIACYLGLYCEROL – SERINE O-PHOSPHATIDYLTRANSFERASE (EC 2.7.8.8) (PHOSPHATIDYLSERINE SYNTHASE). OS006763.1_at gb|Z95637 acyl-CoA:1-acylglycerol-3-phosphate acyltransferase from Brassica napus. [Arabidopsis thaliana]
OS011263_s_at gi|2129657|S71286 oleosin, 20 K – Arabidopsis thaliana OS013884.1_i_at PTSN_ECOLI P31222 ESCHERICHIA COLI. NITROGEN REGULATORY IIA PROTEIN
OS016830.1_at gi|7939571| phospholipase D [Arabidopsis thaliana] OS006772.1_i_at gi|2981620| mutated 3-ketoacyl-CoA thiolase [Arabidopsis thaliana]
OS018554_at KDGL_DROME Q01583 DROSOPHILA MELANOGASTER (FRUIT FLY). DIACYLGLYCEROL KINASE (EC 2.7.1.107) (DIGLYCERIDE KINASE) (DGK)(DAG KINASE). OS005686_at YDEX_ECOLI P77257 ESCHERICHIA COLI. HYPOTHETICAL ABC TRANSPORTER ATP-BINDING PROTEIN YDEX.
OS022506_at PTFA_MYCGE P47308 MYCOPLASMA GENITALIUM. PTS SYSTEM, FRUCTOSE-SPECIFIC IIABC COMPONENT (EIIABC-FRU) (FRUCTOSE-PERMEASE IIABC COMPONENT) (PHOSPHOTRANSFERASE ENZYME II, ABCCOMPONENT) (EC 2.7.1.69) (EII-FRU / EIII-FRU). OS008739.1_at gi|4587543|AC006577_10 Belongs to the PF|00657 Lipase/Acylhydrolase with GDSL-motif family.
OS005330_at GPI2_YEAST P46961 P48014 SACCHAROMYCES CEREVISIAE (BAKER S YEAST). N-ACETYLGLUCOSAMINYL-PHOSPHATIDYLINOSITOL BIOSYNTHETIC PROTEIN GPI2. OS022874_at TRPC_AZOBR P26938 AZOSPIRILLUM BRASILENSE. INDOLE-3-GLYCEROL PHOSPHATE SYNTHASE
OS013194_at gi|2285885| sulfate transporter [Arabidopsis thaliana] OS021397.1_i_at FCGN_HUMAN P55899 HOMO SAPIENS (HUMAN). IGG RECEPTOR FCRN LARGE SUBUNIT P51 PRECURSOR
OS020610_at AMHX_BACSU P54983 BACILLUS SUBTILIS. AMIDOHYDROLASE AMHX (EC 3.5.1.-) (AMINOACYLASE).   
OS021689.1_at KICH_YEAST P20485 SACCHAROMYCES CEREVISIAE (BAKER S YEAST). CHOLINE KINASE (EC 2.7.1.32).   
OS019294_at YKG8_CAEEL P46558 CAENORHABDITIS ELEGANS. HYPOTHETICAL CHOLINE KINASE LIKE B0285.8 IN CHROMOSOME III.   
OS006931.1_at gi|735880| geranylgeranyl pyrophosphate synthase-related protein   
OS017593.1_at gi|2129660|S69197 oleoyl-[acyl-carrier-protein] hydrolase (EC 3.1.2.14) (clone TE 1–7) – Arabidopsis thaliana   
OS023388_r_at YDEZ_ECOLI P77651 ESCHERICHIA COLI. HYPOTHETICAL ABC TRANSPORTER PERMEASE PROTEIN YDEZ.   
OS014177_at YCKJ_BACSU P42200 BACILLUS SUBTILIS. PROBABLE AMINO-ACID ABC TRANSPORTER PERMEASE PROTEIN.   
OS022558_i_at R104_SACPA Q92378 SACCHAROMYCES PARADOXUS (YEAST). MEIOTIC RECOMBINATION PROTEIN REC104.   
OS012669.1_at gi|3044212| acyl-CoA oxidase [Arabidopsis thaliana]   
OS013723_at GLGC_BACCL P30522 BACILLUS CALDOLYTICUS. GLUCOSE-1-PHOSPHATE ADENYLYLTRANSFERASE (EC 2.7.7.27) (ADP-GLUCOSESYNTHASE) (ADP-GLUCOSE PYROPHOSPHORYLASE) (FRAGMENT).   
OS022194_at NEPU_THEVU Q08751 THERMOACTINOMYCES VULGARIS. NEOPULLULANASE (EC 3.2.1.135) (ALPHA-AMYLASE II).   
OS009538_at gi|4490321| nitrate transporter [Arabidopsis thaliana]   
OS014390_at gi|9294650| lipase/acylhydrolase; myrosinase-associated protein [Arabidopsis thaliana]   
OS003885_at gi|4115931| contains similarity to Guillardia theta ABC transporter (GB:AF041468) [Arabidopsis thaliana]   
OS009777.1_at gi|8570057| ESTs AU056822(S20908), C26441(C12328), C28477(C61243) correspond to a region of the predicted gene.~Arabidopsis thaliana putative acyl-coA dehydrogenase (AF049236) [Oryza sativa]