Table 2 Number of full-length, fragmented, and solo LTRs in the sequenced O. sativa (Nipponbare) genome
LTR Retrotransposon Families | Full-length | Solo-LTRs | Fragmented retroelements (Fragmented solo-LTRs) | Subtotal |
|---|---|---|---|---|
Osr1 | 3 | 4 | 11 (6) | 18 |
Osr2 | 2 | 0 | 0 | 2 |
Osr3 | 0 | 0 | 3 (1) | 3 |
Osr4 | 3 | 3 | 1 (1) | 7 |
Osr5 | 1 | 0 | 2 (1) | 3 |
Osr6 | 1 | 0 | 2 (0) | 3 |
Osr7 | 1 | 0 | 3 (2) | 4 |
Osr8 | 7 | 10 | 42 (37) | 59 |
Osr9a | 0 | 0 | 0 | 0 |
Osr10 | 2 | 7 | 21 (18) | 30 |
Osr11a | 0 | 0 | 0 | 0 |
Osr12 | 3 | 0 | 0 | 3 |
Osr13 | 11 | 5 | 19 (12) | 35 |
Osr14 | 1 | 9 | 10 (10) | 20 |
Osr15 | 5 | 1 | 12 (12) | 18 |
Osr16 | 3 | 1 | 0 | 4 |
Osr17 | 3 | 1 | 10 (5) | 14 |
Osr18a | 0 | 0 | 0 | 0 |
Osr19 | 1 | 0 | 0 | 1 |
Osr20 | 1 | 0 | 1 (1) | 2 |
Osr21a | 0 | 0 | 0 | 0 |
Osr22 | 1 | 0 | 1 (0) | 2 |
Osr23 | 1 | 0 | 1 (0) | 2 |
Subtotal for Copia | 50 | 41 | 138 (106) | 229 |
Osr24 | 3 | 0 | 0 | 3 |
Osr25 | 34 | 4 | 40 (26) | 78 |
Osr26 | 7 | 2 | 77 (50) | 86 |
Osr27 | 61 | 39 | 40 (30) | 132 |
Osr28 | 1 | 0 | 2 (2) | 3 |
Osr29 | 6 | 5 | 21 (19) | 32 |
Osr30 | 4 | 17 | 51 (43) | 72 |
Osr31 | 3 | 2 | 2 (2) | 7 |
Osr32 | 0 | 11 | 60 (53) | 71 |
Osr33 | 4 | 5 | 84 (76) | 93 |
Osr34 | 14 | 27 | 214 (176) | 255 |
Osr35 | 2 | 0 | 0 | 2 |
Osr36 | 2 | 0 | 0 | 2 |
Osr37 | 8 | 13 | 28 (22) | 49 |
Osr38a | 0 | 0 | 0 | 0 |
Osr39a | 0 | 0 | 0 | 0 |
Osr40 | 8 | 10 | 33 (27) | 51 |
Osr41 | 7 | 4 | 16 (11) | 27 |
Osr42 | 1 | 0 | 3 (2) | 4 |
Osr43 | 1 | 0 | 7 (6) | 8 |
Osr44 | 1 | 0 | 6 (6) | 7 |
Subtotal for Gypsy | 165 | 139 | 684 (551) | 990 |
Overall | 217 | 180 | 822 (660) | 1219 |