Skip to main content

Table 1 Relative Expression levels of selected genes in target RKO colon cancer cell line

From: Improving signal intensities for genes with low-expression on oligonucleotide microarrays

Grid #

ID

Gene Description

Expression in target cell line

1

Co1

beta actin

+++

2

Co2

GAPDH

+++

3

Co3

Tubulin

+++

4

HK1

Ferritin heavy chain

-

5

HK10

Homo sapiens keratin, hair, basic, 5 (KRTHB5) mRNA

+

6

HK11

Homo sapiens lysophospholipase II (LYPLA2), mRNA

-

7

HK12

Homo sapiens kinesin family protein 3B (KIF3B) mRNA

+++

8

HK13

Homo sapiens tubulin-specific chaperone c (TBCC), mRNA

+

9

HK14

Homo sapiens tankyrase, TRF1-interacting ankyrin-related ADP-ribose polymerase (TNKS) mRNA, and translated products

-

10

HK15

Homo sapiens nesca protein (NESCA), mRNA

+

11

HK16

Homo sapiens myosin 5C (MYO5C), mRNA

++

12

HK17

Human myosin heavy chain 12 (MYO5A) mRNA, complete cds

+

13

HK18

Homo sapiens reticulon 2 (RTN2) mRNA

-

14

HK19

Homo sapiens keratin, hair, acidic,2 (KRTHA2), mRNA

-

15

HK2

Ferritin L chain

+++

16

HK20

Homo sapiens keratin 13 (KRT13) mRNA

+

17

HK3

Phospholipase A2

+++

18

HK4

Ribosomal Protein S12

+++

19

HK5

Ribosomal protein L 12

+++

20

HK6

Ribosomal protein S9

++

21

HK7

hypoxanthine-guanine phophoribosyltranferase

++

22

HK8

H. sapiens mRNA for myosin-I beta

+

23

HK9

Homo sapiens ankyrin repeat-containing protein (G9A), mRNA

+

24

Pr16

Insulin-like growth factor binding protein 2

-

25

H3

Macrophage inhibitory cytokine-1 (MIC-1)

+

26

A22

Cyclin-dependent kinase inhibitor 1A (p21, Cip1)

+

27

R9

Cyclin-dependent kinase inhibitor 1A (p21, Cip1)

+

28

N39

Homo sapiens lymphotoxin alpha

-

29

N59

Homo sapiens tumor necrosis factor

-

30

N76

Excision repair cross complementation group 1

-

  1. +++ high, ++ medium, +low and - no expression of the genes