Table 1 Exon-intron organization of Spatial gene in the mouse chromosome 10. (A) The exact size as the position of the start and the end of each exon are precisely calculated for different Spatial isoforms. The exon 4 contains two alternatively spliced internal regions (4 a, b) while the exon 5 contains three alternatively spliced internal regions (5 a, b, c). (B) The exact position of the start, the stop and the polyA tail is calculated for short and long isoforms. Feature positions in bp are calculated relatively to position 63050000 of the mouse chromosome 10 (Ensembl build 32). Introns can not be determined because the genomic sequence contains stretches of nucleotides.
A | ||||||||
|---|---|---|---|---|---|---|---|---|
Short isoforms | Long isoforms | |||||||
Exon | Start | End | Length | Spatial-α | Spatial-β | Spatial-γ | Spatial-δ | Spatial-ε |
1 | 3873 | 4027 | 155 | 3873...4027 | 3873...4027 | |||
2 | 4834 | 4975 | 142 | 4834...4975 | 4834...4975 | 4834...4975 | ||
3 | 5303 | 5550 | 248 | 5303...5550 | 5303...5550 | 5303...5550 | 5303...5550 | 5303...5550 |
4 ab | 8090 | 8350 | 261 | 8090...8350 | 8090...8350 | |||
4 b | 8192 | 8350 | 159 | 8192...8350 | 8192...8350 | 8192...8350 | ||
5 abc | 9093 | 9543 | 451 | 9093...9543 | ||||
5 bc | 9160 | 9543 | 384 | 9160...9543 | 9160...9543 | |||
5 b | 9160 | 9239 | 80 | 9160...9239 | 9160...9239 | |||
6 | 12958 | 13149 | 192 | 12958...13149 | 12958...13149 | |||
7 | 14960 | 15041 | 82 | 14960...15041 | 14960...15041 | |||
8 | 15696 | 15837 | 142 | 15696...15837 | 15696...15837 | |||
9 | 17083 | 17135 | 53 | 17083...17135 | 17083...17135 | |||
10 | 18002 | 18242 | 241 | 18002...18242 | 18002...18242 | |||
B | ||||||||
Start | Stop | PolyA Signal | ||||||
Short isoforms | 4917 | 9285 | 9499 | |||||
Long isoforms | 3984 | 18079 | 18201 | |||||