Table 4 Top 20 contigs with the most assembled ESTs.
From: From biomedicine to natural history research: EST resources for ambystomatid salamanders
Contig ID | # ESTs | Best Human Match | E-value |
|---|---|---|---|
MexCluster_4615_Contig1 | 415 | (NM_000519) delta globin | E-39 |
MexCluster_600_Contig1 | 354 | (NM_182985) ring finger protein 36 isoform a | E-110 |
MexCluster_6279_Contig1 | 337 | (NM_000559) A-gamma globin | E-32 |
MexCluster_10867_Contig1 | 320 | (NM_000558) alpha 1 globin | E-38 |
MexCluster_5357_Contig1 | 307 | (NM_000558) alpha 1 globin | E-37 |
MexCluster_9285_Contig3 | 285 | (NM_001614) actin, gamma 1 propeptide | 0 |
MexCluster_7987_Contig3 | 252 | (NM_001402) eukaryotic translation elongation f1 | 0 |
MexCluster_9285_Contig1 | 240 | (NM_001101) beta actin; beta cytoskeletal actin | 0 |
MexCluster_9279_Contig3 | 218 | (NM_000223) keratin 12 | E-113 |
MexCluster_11203_Contig1 | 181 | (NM_002032) ferritin, heavy polypeptide 1 | E-70 |
MexCluster_8737_Contig2 | 152 | (NM_058242) keratin 6C | E-131 |
MexCluster_3193_Contig1 | 145 | (NM_004499) heterogeneous nuclear ribonucleoprotein | E-90 |
MexCluster_8737_Contig7 | 134 | (NM_058242) keratin 6C | E-131 |
MexCluster_5005_Contig3 | 132 | (NM_031263) heterogeneous nuclear ribonucleoprotein | E-124 |
MexCluster_6225_Contig1 | 125 | (NM_001152) solute carrier family 25, member 5 | E-151 |
MexCluster_1066_Contig1 | 122 | [31015660] IMAGE:6953586 | E-16 |
MexCluster_8737_Contig4 | 114 | (NM_058242) keratin 6C; keratin, epidermal type II | E-132 |
MexCluster_8187_Contig2 | 113 | (NM_005507) cofilin 1 (non-muscle) | E-65 |
MexCluster_2761_Contig1 | 109 | (NM_001961) eukaryotic translation elongation factor2 | 0 |
MexCluster_9187_Contig1 | 105 | (NM_007355) heat shock 90 kDa protein 1, beta | 0 |
A. t. tigrinum | Â | Â | Â |
TigCluster_6298_Contig1 | 654 | (NM_000519) delta globin | E-38 |
TigCluster_10099_Contig2 | 193 | (NM_001614) actin, gamma 1 propeptide | 0 |
TigCluster_6470_Contig1 | 167 | (NM_000558) alpha 1 globin | E-39 |
TigCluster_9728_Contig2 | 142 | (NM_000477) albumin precursor | E-140 |
TigCluster_6594_Contig1 | 117 | (NM_001402) eukaryotic translation elongation f1 | 0 |
TigCluster_5960_Contig1 | 91 | (NM_001101) beta actin; beta cytoskeletal actin | 0 |
TigCluster_7383_Contig1 | 77 | (NM_001614) actin, gamma 1 propeptide | 0 |
TigCluster_6645_Contig1 | 76 | (NM_001063) transferrin | 0 |
TigCluster_7226_Contig4 | 74 | (NM_006009) tubulin, alpha 3 | E-160 |
TigCluster_7191_Contig1 | 67 | (NM_019016) keratin 24 | E-89 |
TigCluster_10121_Contig1 | 64 | (NM_005141) fibrinogen, beta chain preproprotein | 0 |
TigCluster_6705_Contig1 | 63 | (NM_000558) alpha 1 globin | E-39 |
TigCluster_7854_Contig1 | 62 | (NM_021870) fibrinogen, gamma chain isoform | E-121 |
TigCluster_6139_Contig1 | 52 | (NM_001404) eukaryotic translation elongation f1 | 0 |
TigCluster_7226_Contig2 | 51 | (NM_006009) tubulin, alpha 3 | 0 |
TigCluster_10231_Contig1 | 44 | (NM_003018) surfactant, pulmonary-associated prot. | E-08 |
TigCluster_6619_Contig1 | 36 | (NM_000041) apolipoprotein E | E-38 |
TigCluster_7232_Contig2 | 35 | (NM_003651) cold shock domain protein A | E-46 |
TigCluster_5768_Contig1 | 34 | (NM_003380) vimentin | E-177 |
TigCluster_9784_Contig3 | 32 | |XP_218445.1| similar to RIKEN cDNA 1810065E05 | E-15 |