Table 8 EST loci used in a population-level PCR amplification screen in A. ordinarium
From: From biomedicine to natural history research: EST resources for ambystomatid salamanders
Locus ID | Forward Primer 5' to 3' | Reverse Primer 5' to 3' |
|---|---|---|
1F8 | AAGAAGGTCGGGATTGTGGGTAA | CAGCCTTCCTCTTCATCTTTGTCTTG |
1H3 | GGCAAATGCTGGTCCCAACACAAA | GGACAACACTGCCAAATACCACAT |
2C8 | GCAAGCACCAGCCACATAAAG | GGCCACCATAACCACTCTGCT |
3B10 | TCAAAACGAATAAGGGAAGAGCGACTG | TTGCCCCCATAATAAGCCATCCATC |
5E7 | ACGCTTCGCTGGGGTTGACAT | CGGTAGGATTTCTGGTAGCGAGCAC |
5F4 | CCGAGATGAGATTTATAGAAGGAC | TAGGGGAAGTTAAACATAGATAGAA |
6A3 | GTTTATGAAGGCGAGAGGGCTATGACCA | ATCTTGTTCTCCTCGCCAGTGCTCTTGT |
6B1 | TGATGCTGGCGAGTACAAACCCCCTTCT | TTTACCATTCCTTCCCTTCGGCAGCACA |
6B3 | ACCACGTGCTGTCTTCCCATCCAT | ACGAAGCTCATTGTAGAAGGTGTG |
6B4 | CCCACGATGAATTGGAATTGGACAT | CTGCCTGCCAGACCTACAGACTATCGT |
6C4 | ATGGCGCCAAAGTGATGAGTA | GGGCCAGGCACACGACCACAAT |
6D2 | ATCAAGGCTGGCATGGTGGTCA | GGGGGTCGTTCTTGCTGTCA |
6H8 | GAAGAAGACAGAAACGCAGGAGAAAAAC | CGGGCGGGGGCGGGTCACAGTAAAAC |
BL005B_A01.5.1 | GACAGGTCATGAACTTTTGAAAATAA | AAAGTATATGTACCAAATGGGAGAGC |
BL006A_G07.5.1 | GATGTCCTCTCCACTATACAAGTGTG | GTTTGACTTGTCACCACTTTATCAAC |
BL012D_F02.5.1 | ACAGCCAGAAATAGAAACTTTGAACT | TGAAAGTATGTATTGTTTTCACAGGG |
BL013C_E01.5.1 | AGGATGAAATAATATGCTGTGCTTC | ACCGTGATAAACTCCATCCCTT |
BL014D_B11.5.1 | AGCAAAACTCCTCTATGAATCTCG | ATTGCACACTAAATAGGTGAATACGA |
BL279A_G10.5.1 | ATGGCAGGATGAAGAAAGACAT | ATGCACTTTGGACCCACTGAG |
Et.fasta.Contig1023.5.1 | TGTGGTTATTGGACTACTTCACTCTC | AAACGTCCATTTGACACTGTATTTTA |
Et.fasta.Contig1166.5.1 | GAATGAAGAGAAAATGTTTTGAAGGT | GCACAGTATTGGCTATGAGCAC |
Et.fasta.Contig1311.5.1 | AGAAAACTGTGTCAAGCTTATTTTCC | CAACTTAGTGTTCACATTTCTGAGGT |
Et.fasta.Contig1335.5.1 | CCACTTATGGTAGTTCCCACTTTTAT | GCTAAAGAATACCAAGAACCTTTGAC |
Et.fasta.Contig1381.5.1 | GTCACAGGTATAACATTGAAAGGATG | TAAATGAATCAAACATTGAAGAGAGC |
Et.fasta.Contig1459.5.1 | ATAACAAGGACATGTTCTGCTGG | CTAGCAGAACCCTGTATAGCCTG |
Et.fasta.Contig1506.5.1 | AGGATATCCGCTCAGAAATATGAAG | CTGACCACTTGCAAAACTTACTACCT |
Et.fasta.Contig1578.5.1 | CCTAGAACATTACCAAAACAGACTCA | AATGAAGAAGTATTGCATGTGAGAAC |
Et.fasta.Contig1647.5.1 | GTACAACGTCAGGCAAAGCTATTCT | ATCTCCAACACCGTGGCTAAT |
Et.fasta.Contig1717.5.1 | GAACTTGTTGGCAGGTTTCTCTT | CTAGTGATAGGTTGGACATACCAGAG |
Et.fasta.Contig1796.5.1 | TGTGGGTATGTATATGGCTAACTTGT | AGATTTTATGTGCTACTGCATTTACG |
Et.fasta.Contig1908.5.1 | CTCATGACTTAATTGCTGTTCTTCG | ATAACCATTCTGAGGTTTTGAGTTG |
Et.fasta.Contig1941.5.1 | ATCTCCTGCTTCATCTCTTGATTTAT | TAACAGATTTAATAAACGTCCCCTTC |
Et.fasta.Contig1943.5.1 | AGTACGATGAATCTGGTCCTTCAAT | CCACAATACTGACATACTCTGGTCTT |
Et.fasta.Contig325.5.1 | GTGAAGTCAGTGAGTAAAGTCCATGT | CTAGGATACCAGTGGGAGAGTGTAAT |
Et.fasta.Contig330.5.1 | GTCATCACCTCCACTACTTCACAAG | TTTTGGCACTGTAAGATTCTATGAAC |
Et.fasta.Contig536.5.1 | CCTTAGGTAGAACAGACTGAAGCAG | GAAACATGAAACTGGACTTGTTTTAG |
Et.fasta.Contig917.5.1 | GGATGCAGATTCTTCCTATTTTACTC | CTGGTCACTTTACTTGTTTTCAGTGT |
Et.fasta.Contig926.5.1 | TTCATCACATTCTACTTCACAAATCA | CTAGGCAAGCAAGCTTTCTAATAGTT |
Et.fasta.Contig93.5.1 | GAATAAAAGCAACAATTGCAGAGTTA | CTCGACTCCTTCTACGATCTCTACTC |
Et.fasta.Contig990.5.1 | GTTTAGGTTAGTATGAAGGATCCCAA | TGCCAGTACTCACCAATTAGTAAAAG |
G1-C12 | CCCAAATCCAGGAGTTCAAA | TGGGACCTGGGGCTTCATT |
G1-C13 | TTGCCCGAGAAAAGGAAGGACATA | CAAGGGTGGGTGAGGGACATC |
G1-C5 | F-CACTGTTGACTTGGGTTATGTTATT | CTGCTCCTAGGGTTTGTGAAG |
G1-C7 | CCCGTGTGGCTGGCTTGTGC | TCGGCTACTTTGGTGTTTTTCTCCCTCAT |
G1-C9 | TGGTCCGGCAACAGCATCAGA | GCTTTTCGGTATTCAACGGCAGAGTG |
G1-C9 | TGGTCCGGCAACAGCATCAGA | GCTTTTCGGTATTCAACGGCAGAGTG |
G1-D5 | AGACCCTTGCTGTGTAACTGCT | GACTGGGACTGACTTCTATGACG |
G1-D6 | CAGCGTGCCCACCCGATAGAA | TCCCAAAAAGTAAAATGTGCAAAGAAAA |
G1-D7 | CAGCGGTGGAAATGACAAACAGG | CCAAGACGACGAGGAACGGTATT |
G1-E12 | CAACCATGAGAGGAGGCCAGAGAAC | AAAACAGCACTACCTACAAAACCCTATT |
G1-F1 | TTAGTTTGGGTGCAGACAGGA | GGTGCTCAACAACAAATCAACT |
G1-F20 | TCCCCAACAACTCCAGCAGAT | GGAAACCACCTAGACGAAAAATG |
G1-I18 | CATGTTTGTGGGTGTGGTGAA | AAAAGCGGCATCTGGTAAGG |
G1-I19 | ACCCAGACCTGTCCACCTCA | GAACAGCTCTCCAATCCACAAG |
G1-I21 | CCAAGCGAAGGAGGCGTGTG | CATGTGGCTCTTTGTTTCTGGA |
G1-I5 | TAATCGTGTTTGGTGGCATCCTTGAGTC | AGCAGCAGTTCCATTTTCCCACACCA |
G1-I8 | ACCTGCAGTGGGCTAAGACC | ATGGAAATAATAAAATAAAATGTT |
G1-J10 | CGTTCGCTTTGCCTGCCACA | GGCTCTTCCCCGGTCGTCCAC |
G1-J17 | AGCGCCTTCTACACGGACAC | TATGCCCCAATTACTCTTCTGC |
G1-J2 | TACAGTAACTATGCCAAGATGAAATG | CAATATGGATAATGGCTGTAGACC |
G1-J20 | ATCCTCCAAGCTCACTACAACA | CCAGCCCCTTCCCAAACAG |
G1-J9 | CTGTCATTGCCTGCATCGGGGAGAAG | TGTTGAGGGGAAGCAGTTTTG |
G1-K2 | GCTTTCGCCTTTGACACCTC | GGCCGGACCATTGCTGAAGAAG |
G1-L11 | AAAGTGACCATCCAGTGCCCAAACCT | CCGGCCGAAACTGACGAGATACATTAG |
G1-L13 | TCAGCTGCACTAGGTTTGTC | CATTTTGATTTGCTCCATAA |
G1-L19 | GACAACCTTGAATCCTTTATG | AGATGTTGGTTGGTGACTTAT |
G1-L20 | TGGGCATAGATGGCAAGGAAAAA | CCCCCAGCATCTCGCATACAC |
G1-L7 | GTGCTACAGGAAGGAATGGATG | TAGCACAGGAACAGCCGACAATAA |
G1-M14 | CCGCTTGGACATGAGGAGAT | TGGCAAAGAAACAGAACACAACTA |
G1-M19 | GAGAAGTAGTGTCCCGGCAGAAAC | ATGGGTGAAAACTTAGGTGAAATG |
G1-N9 | GCGGGGCAATACATGACGTTCCACAG | GACCCCCATCTCCGTTTCCCATTCC |
G1-O1 | GGGGTAGAGCACAGTCCAGTT | TTGCAAGGCCGAAAAGGTG |
G1-O12 | GGAATTCCGGGGCACTACT | TCGCGAGGACGGGGAAGAG |
G1-O24 | CGGCCTTCCTGCAGTACAACCATC | TCGGCAACGTGAAGACCATA |
G2-A11 | GCCCCTGGAAGCTGTTGTGA | GGGGTCCATCCGAGTCC |
G2-A7 | TTACCCCACAGACAAAATCAACACC | GGCGGCCCCTCATAGCAC |
G2-B1 | GGGCCTAGTCCTGCTGGTC | CAAAGAGTGCGGAGAAATGG |
G2-B8 | CAACATGCGACCACTATAGCCACTTCCT | CGCCACCGCCACCACCACA |
G2-C2 | TTTGCAGGAAGAGTCATAACACAG | GTCAACAACACCCTTTTCCCTTCCT |
G2-D1 | GCAGGTCGGCAAGAAGCTAAAGAAGGAA | AGGGTTGGTTTGAAAGGATGTGCTGGTAA |
G2-E17 | GGAGCACCAAATTCAAGTCAG | CGTCCCCGGTCAATCTCCAC |
G2-E19 | CCAGTTTGAGCCCCAGGAG | TCGCGGCAGTCAAGAGGTC |
G2-F17 | TATCCTCTTATTGCTGCATTCTCCTCAC | AGTACGGCCGTTCACCATCTCTG |
G2-F2 | CACACCACAGACGCATTGAC | TCCCCAGCCTGTGTAGAAC |
G2-G13 | GGGAGGGGAGAAGGCTACCA | ATACACGGCTTCCATGCTTCTTCTT |
G2-G15 | CCACGGCCCCACATCCAGC | TCCCGCAGAATTTCCGTATCCAT |
G2-G21 | TCCAAGAGGGTGTGAGGTGAAC | AAAGCCATGCGAAGCGGAAGAC |
G2-G23 | GGTTTGGTACTTCAGCGGATGT | CCAAAGCCTGTACTATGCGAAAAG |
G2-G5 | CGGTCCCTACTGTGGTCTATGGTTTTCA | GGCTCTGCATATCCTCGGTCACACTTCC |
G2-G6 | CCCATGGCTGCAAGGATTACG | CAGGGGTTGTTGGGAGGCAGTGT |
G2-H18 | TTGTCAAATGGGCGAGTTCA | TGTTTTGCACCCAGTTTTTG |
G2-I18 | GATCTCCTCAGGTCTCTTTCA | GATTATGGGCCGGTGTCTCT |
G2-I23 | TGACTTTCCCAATGTGAGCAGAC | CAGAGGTGGTGTTACAGCAGCAGTTT |
G2-J12 | CCTCTTGTCCCAGTGCCAGTG | TCCAGGGATCCGAAACAAAG |
G2-J21 | CCGCCTCAGCCTGTTTCTCTACTTTT | CTTTGAATTTCTGCTTTTGGTGCTCTGC |
G2-K12 | ACATTAGTCCTGGTTACGAGAGC | AAAGGGCAGTCCAGCATTGA |
G2-K2 | CTGCCCAAGAAGACCGAGAGCCACAAG | AGCGCCCCCTGCACCAAAATCA |
G2-L16 | CCAAGGGTAGGAGAACAAGACA | ATGGCATGCTGGGAAATCA |
G2-L21 | GAATCTAGGTCCAAGCAGTCCCATCT | GACCATCACACCACTACCCACACTCA |
G2-L3 | TGAAAGAGGCCAGAAACAAGTAG | TTCCCAAGGTCTCCATAACAAT |
G2-L4 | TGGCCAAGAAGATGAAACAGGAAGAGGAG | TGGCAAAGGACACGACGCAGAG |
G2-M14 | CGGCCTCCTCGACGCATACG | CCAGGCCGGCCCATTGTTC |
G2-M24 | ACGGAGCACGGTCAGATTTCACG | CCCGGCTGGCTCTTCTTGCTCTT |
G2-M3 | CGATCCGCATTGAACGAGT | TGTGGCAGGAAGGAGAAGG |
G2-N2 | CGTGTTTTCCTCCTATGTCGACTTCTTTG | ACGTGCTCTGCCTTTCTTGATCTTGTGTT |
G3-D7 | AGGATTTCTTGGCCGGTGGAGTGG | GAAGTTGAGGGCCTGGGTGGGGAAGTA |
NT001D_E08.5.1 | AGAAGTTCCTAGATGAGTTGGAGGAG | AATTAATTTCCTAAACCAGGTGACAG |
NT010B_E09.5.1 | GAAGAGGTCCTAAAATATCAAGATGC | ATGATAGACTTCGTCCTTGTCATAGA |
NT014D_E01.5.1 | AAAGAAGTCCCGCATCTAACCT | ATTAAATATGAGAAGATGTGTGCAGG |
V2_p1_b8 | AGTCACTGTGTTACATTATCACCCAC | ATAATTATACACTGCGGTCTGCATCT |
V2_p1_c5 | AGTACCTGTTCGACAAGCACAC | TGAGAACATAGACAAGTTAACATACACC |
V2_p1_d10 | GAGATAGAAAGGCTGCATAAAGAAAT | TATGTTTCAACAATGTACAGGAAACC |
V2_p1_d4 | CACCAGAACAAGCTGTATTTTTATGT | TGGTTTGCATCATATATTAAAGGGTA |
V2_p1_g7 | GACTTCAAGCACATTGGGAAAC | ATTGTAAACTTGATAGGCTGGTGAG |
V2_p2_g6 | AGAATTCCCAATAGCACCTGAAAT | CACTTGGTAAATACATACACACAGCA |
V2_p2_h2 | CTTTTTGGCCTGGTCTTTTTG | AGATTCTTCAGACTCGTCCTTCTTT |
V2_p3_a5 | TTTACACAGAAACCTTGTTTATTTGGC | TTTAAGGATGCTTAGAGGCAAAGTATT |
V2_p3_b1 | AGTCACTGTGTTACATTATCACCCAC | TATACACTGCGGTCTGCATCTACT |
V2_p5_b3 | AATGGGATGAAGAGCGAGAAT | CTGCCCCATTGACATTTACCTA |
V2_p5_h3 | CCTTCAGACGAAAACAGCACTAAG | TACAGTGTATGAGAGCCCAATATTTC |
V2_p6_a4 | AGAAATACATCAAATATCGGGTGG | AAAAAGGACAATGTTCAGCTCTCT |
V3_p1_a21 | ACCAAGTTCTTGGAAAGTGGTG | CTTAGTGTCTCCTGGGTTTGAATAG |
V3_p1_b13 | GTCTTGGTACTCAATGAAGGAGATG | TCAATCTGATGAAGAGTTTACATGTCT |