Skip to main content

Table 4 Differentially expressed cDNAs detected in dual labeling microarray experiments comparing isogenic lines of the T locus in soybean.

From: Microarrays for global expression constructed with a low redundancy set of 27,500 sequenced cDNAs representing an array of developmental stages and physiological conditions of the soybean plant

Clone ID

Genbank

Intensitiesa

Expression Ratios

Functional Annotationd

 

3' Accession

Replicate 1

Replicate 2

    
  

XB22A (T/T)

37609 (t*/t*)

XB22A (T/T)

37609 (t*/t*)

XB22A/37609 (T/T) / (t*/t*)

 
  

Cy 5

Cy3

Cy3

Cy5

Rep 1b

Rep 2b

Aveb,c

 

Overexpressed in XB22A

Gm-b10BB-23

AF499730

28686

10847

38350

8194

2.645

4.680

3.520

Flavonoid-3' hydroxylase

Gm-b10BB-23

AF499730

26794

9746

34956

7839

2.749

4.459

3.512

Flavonoid-3' hydroxylase

Gm-b10BB-22

AF499731

23979

9018

33272

7626

2.659

4.363

3.440

Flavonoid-3' hydroxylase

Gm-b10BB-23

AF499730

26094

9231

23580

5264

2.827

4.479

3.427

Flavonoid-3' hydroxylase

Gm-b10BB-23

AF499730

26812

10670

35600

7963

2.513

4.471

3.350

Flavonoid-3' hydroxylase

Gm-b10BB-22

AF499731

25663

9746

32520

7685

2.633

4.232

3.338

Flavonoid-3' hydroxylase

Gm-b10BB-22

AF499731

24020

9468

34329

8241

2.537

4.166

3.295

Flavonoid-3' hydroxylase

Gm-b10BB-22

AF499731

24578

10218

35465

8158

2.405

4.347

3.267

Flavonoid-3' hydroxylase

Gm-b10BB-23

AF499730

24662

9850

26041

5957

2.504

4.371

3.208

Flavonoid-3' hydroxylase

Gm-b10BB-22

AF499731

22240

9526

31641

7643

2.335

4.140

3.138

Flavonoid-3' hydroxylase

Gm-b10BB-22

AF499731

24548

11084

35328

8233

2.215

4.291

3.100

Flavonoid-3' hydroxylase

Gm-b10BB-22

AF499731

19465

8343

30897

7912

2.333

3.905

3.098

Flavonoid-3' hydroxylase

Gm-b10BB-23

AF499730

26572

12004

37720

8844

2.214

4.265

3.084

Flavonoid-3' hydroxylase

Gm-b10BB-23

AF499730

21583

9921

31828

7410

2.175

4.295

3.082

Flavonoid-3' hydroxylase

Gm-b10BB-22

AF499731

21122

10431

37273

8852

2.025

4.211

3.028

Flavonoid-3' hydroxylase

Gm-b10BB-23

AF499730

26053

12897

37691

8164

2.020

4.617

3.027

Flavonoid-3' hydroxylase

Underexpressed in XB22A

Gm-r1070-484

BE819850

2843

6235

3931

8702

0.456

0.452

0.454

Bowman-Birk inhibitor

Gm-r1070-8083

BE823467

2471

5070

3498

8557

0.487

0.409

0.438

Ribonucleoprotein homolog

Gm-r1070-8006

BE823540

3353

7237

4145

12219

0.463

0.339

0.385

Trypsin inhibitor, Kunitz

Gm-r1070-9195

BE824378

1889

4384

2383

7562

0.431

0.315

0.358

No hits found

Gm-r1070-120

BE657237

3083

7548

3769

11877

0.408

0.317

0.353

Trypsin inhibitor, Kunitz

Gm-r1070-8909

BE824331

3771

10945

3756

13568

0.345

0.277

0.307

Beta conglycinin

Gm-r1070-9099

BE824364

1806

19569

1663

31399

0.092

0.053

0.068

Albumin precursor/leginsulin

  1. (a) Intensities after background subtraction and global normalization between replicates and within each slide are shown.
  2. (b) The mean ratios of the 16 flavonoid hydroxylase cDNAs are significant below the p = 0.0001 level in a t-test compared to 2.0 as the mean.
  3. (c) The average ratio of both slides is calculated by as follows: (XB22A Rep 1 intensity + XB22A Rep2 intensity) / (37609 Rep 1 intensity + 37609 Rep 2 intensity)
  4. (d) The matches for all of the functional annotations were to soybean (Glycine max) sequences except for the ribonucleoprotein homolog which was to Arabidopsis thaliana.
Back to article page

BMC Genomics

ISSN: 1471-2164

Contact us