Homopolymer tract length dependent enrichments in functional regions of 27 eukaryotes and their novel dependence on the organism DNA (G+C)% composition

Table 1 Summary of the sequence files of the 27 organisms studied

ORGANISM	ABBR.	DNA type	DOCUMENTS BEFORE CLEAN-UP	DOCUMENTS AFTER CLEAN-UP	TOTAL (bp)	TOTAL GC%
Dictyostelium discoideum	Dd	single genes	492	440	966261	25.70
Plasmodium falciparum	Pf	single genes	1652	790	1065133	27.11
		chromosome II, III	2	2	2007209	19.82
Tetrahymena thermophila	Tt	single genes	109	97	214676	28.89
Candida albicans	Ca	single genes	439	378	959035	35.21
Manduca sexta	Ms	single genes	54	46	119657	35.62
Caenorhabditis elegans	Ce	single genes	234	221	1319875	36.92
Schizosaccharomyces pombe	Spo	single genes	813	720	1346439	37.54
Arabidopsis thaliana	At	single genes	1908	1520	3139637	38.09
Schistosoma mansoni	Sm	single genes	98	74	125605	38.37
Danio rerio	Dr	single genes	339	266	603534	38.60
Saccharomyces cerevisiae	Sc	single genes	2249	928	3815906	38.68
		chromosome I-XVI	16	16	11426263	38.45
Drosophila melanogaster	Dm	single genes	1883	968	3459297	39.88
Strongylocentrotus purpuratus	Spu	single genes	153	113	116647	41.78
Xenopus laevis	Xl	single genes	568	411	805354	41.99
Oryza sativa	Os	single genes	605	507	1514656	44.61
Trypanosoma brucei	Tb	single genes	457	368	1039208	46.17
Fugu rubripes	Fr	single genes	216	181	1737132	46.30
Zea mays	Zm	single genes	629	480	1225027	46.92
Mus musculus	Mm	single genes	9288	5179	11191148	47.36
Anopheles gambiae	Ag	single genes	78	43	73592	48.20
Gallus gallus	Gg	single genes	1868	1061	1910331	50.00
Toxoplasma gondii	Tg	single genes	195	117	284187	50.70
Emericella nidulans	En	single genes	72	62	165648	51.07
Aspergillus niger	An	single genes	215	160	386447	52.65
Neurospora crassa	Nc	single genes	252	217	494046	53.37
Leishmania major	Lm	single genes	89	81	129155	59.11
Chlamydomonas reinhardtii	Cr	single genes	136	114	349624	61.84

ISSN: 1471-2164