Table 4 Analysis of unitags mapping 5' of or within Ensembl transcript boundaries. #
From: Evaluation of the chicken transcriptome by SAGE of B cells and the DT40 cell line
Unitag | Ensembl ID | BLAST result ## | Supporting bursal EST | Unitag relationship to Ensembl transcript ### |
|---|---|---|---|---|
Unitags mapping 5' | Â | Â | Â | Â |
CATGCTGCTCGCACGAGCCCT | ENSGALT00000002525.1 | Q9W7P7 | riken1_17l12r1 | Upstream 5' exon |
CATGGCGGGGTTCCCGGGGCA | ENSGALT00000005092.1 | PEF protein with a long N-terminal hydrophobic domain | riken1_18i20r1 | Upstream 5' exon (EST supports two additional 5' exons) |
CATGCTCCTGCTGCTGGCTGG | ENSGALT00000009521.1 | LAC_CHICK | dkfz426_24a5r1 | Upstream 5' exon |
CATGAGGCACCTCCTGTTGGC | ENSGALT00000001476.1 | GR78_CHICK | riken1_25c14r1 | 5' upstream/Exon1 (EST supports one additional 5' exon) |
CATGGCCGCCCAAGGAGAGCC | ENSGALT00000004055.1 | RAN_CHICK | riken1_25b20r1 | 5' upstream/Exon1 (EST supports one additional 5' exon) |
Unitags mapping within transcript boundaries | Â | Â | Â | Â |
CATGTACTGGTTGTCTGTTTT | ENSGALT00000025884 | HG14_CHICK | dkfz426_13h16r1 | Intron 4–5 |
CATGCATAGAGGCTTTATTGC | ENSGALT00000021336 | Aldo-keto reductase family 1 member | dkfz426_3h12r1 | Intron 8–9 |
CATGTTGGGACTCACCACTCT | ENSGALT00000000504 | No description | dkfz426_13d22r1 | Intron 5–6/Exon6 |
CATGGTCACCCTAGTAAATAG | ENSGALT00000009677 | Protein kinase C, beta type | dkfz426_38f16r1 | Intron 14–15 |
CATGTAAAGTGTTAGCTGTAC | ENSGALT00000006857 | ITF2_CHICK | dkfz426_14i24r1 | Intron 8–9 |
CATGTTACCTGCAACCTGCTG | ENSGALT00000021577 | Centromeric protein E | dkfz426_17a21r1 | Intron 28–29 |
CATGGGATATACTGAAAATCT | ENSGALT00000009956 | T-cell activation leucine repeat-rich protein | dkfz426_41d20r1 | Intron 1–2 |
CATGGGCTGGTTGGTTTTTGT | ENSGALT00000028428 | No description | dkfz426_43g3r1 | Intron 2–3 |
CATGGTCAAGTACAACTCTTA | ENSGALT00000022583 | Bcl-2-associated transcription factor | dkfz426_12n7r1 | Intron 8–9 |