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Table 1 Input data (number of sequence reads) for the CASCAD pipeline and number of predicted candidate SNPs.

From: CASCAD: a database of annotated candidate single nucleotide polymorphisms associated with expressed sequences

 

Rattus norvegicus

Danio rerio

Input data

  

   mRNA

25, 634

3, 366

   EST

244, 518

283, 572

   WGS

19, 813, 313

11, 588, 394

Candidate SNPs predicted

33, 305

51, 769

   synonymous

3, 842

9, 111

   non-synonymous

3, 708

6, 217

   nonsense

162

158

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BMC Genomics

ISSN: 1471-2164

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