Skip to main content

Table 4 Domain architectures found in phytobacteria of two or more subdivisions of the Proteobacteria and not found in non-plant-associated bacteria.

From: Protein domains and architectural innovation in plant-associated Proteobacteria

Domain architecture Species distribution Proteins
DUF763 Aeropyrum pernix; Archaeoglobus fulgidus; Bradyrhizobium japonicum; Methanobacterium thermoautotrophicum; Methanopyrus kandleri; Picrophilus torridus; Pyrobaculum aerophilum; Pyrococcus abyssi; Pyrococcus furiosus; Pyrococcus horikoshii; M. loti; S. meliloti; Sulfolobus solfataricus; Sulfolobus tokodaii; Thermoplasma acidophilum; Thermoplasma volcanium; X. axonopodis (pv. citri); X. campestris (pv. campestris); Hypothetical protein XCC1094. (Q8PBM5); Hypothetical protein XAC1190. (Q8PN83); Hypothetical protein APE1824. (Q9YAX1); Hypothetical protein ST0586. (Q974S6); Hypothetical protein PF0611. (Q8U361); Hypothetical protein. (Q97VZ2); Hypothetical protein PH0745. (O58515); Hypothetical protein SMb21455. (Q92U57); Hypothetical protein. (Q9UZ46); Mlr6856 protein. (Q987Y3); Bll3834 protein. (Q89NK4); Uncharacterized conserved protein. (Q8TYA4); Hypothetical protein PAE0766. (Q8ZYH9); Hypothetical protein TVG0468151. (Q97BH6); Hypothetical protein Ta1095. (Q9HJ77); Hypothetical protein AF1496. (O28776); Hypothetical protein. (Q6L1J8); Hypothetical protein MTH448. (O26548); Hypothetical protein MTH449. (O26549);
VirK A. tumefaciens (strain C58 / ATCC 33970); A. tumefaciens; Bradyrhizobium japonicum; P. syringae (pv. tomato); R. solanacearum; Rhizobium sp. (strain NGR234); X. axonopodis (pv. citri); X. campestris (pv. campestris); X. fastidiosa (strain Temecula1 / ATCC 700964); X. fastidiosa; VirK (Tiorf135 protein). (O50246*); VirA/G regulated gene. (Q7CNV8); Hypothetical 15.8 kDa protein in pinF2 3'region (ORF2). (Q44433*); Hypothetical 15.6 kDa protein y4WH. (P55686*); PUTATIVE SIGNAL PEPTIDE PROTEIN. (Q8XX33*); VirK protein. (Q8PDC2*); VirK protein. (Q8PQ93); ID299. (Q9ANE2*); Blr1847 protein. (Q79UP9); VirK protein. (Q87D31); VirK protein. (Q9PC40*); Hypothetical protein. (Q880Z8);
DUF1427 A. tumefaciens (strain C58 / ATCC 33970); Bradyrhizobium japonicum; P. aeruginosa; R. solanacearum; Rhizobium leguminosarum (biovar trifolii); S. meliloti; X. campestris (pv. campestris); Hypothetical protein XCC2052. (Q8P914); Bsl6958 protein. (Q89EW2); Hypothetical protein. (Q93EB2); HYPOTHETICAL TRANSMEMBRANE PROTEIN. (Q8Y2U1*); AGR_L_1747p. (Q8U4X9*); Hypothetical protein. (Q92Y85); Bsr4258 protein. (Q89MD5); Hypothetical protein. (Q9I0E5*);
DUF1486 A. tumefaciens (strain C58 / ATCC 33970); Neurospora crassa; P. aeruginosa; P. syringae (pv. tomato); R. solanacearum; M. loti; S. meliloti; Hypothetical protein. (Q7SFH5); Hypothetical protein Atu3018. (Q8UBJ8); Hypothetical protein. (Q92YL1); Mlr2224 protein. (Q98IW1); Hypothetical protein. (Q9I3U3); Hypothetical protein. (Q9JP27); AGR_L_3571p. (Q7CRD4); Hypothetical protein RSc0819. (Q8Y171);
RepB A. tumefaciens (strain C58 / ATCC 33970); P. syringae (pv. tomato); M. loti; S. meliloti; Msr9757 protein. (Q98P91); Mll8115 protein. (Q983Y2); Hypothetical protein. (Q88BH6); Hypothetical protein Atu5040. (Q8UKR0); AGR_pAT_52p. (Q7D423); Hypothetical protein. (Q92XS2); Hypothetical protein. (Q930E6); Hypothetical protein. (Q930E5);
DUF442~Lactamase_B A. tumefaciens (strain C58 / ATCC 33970); M. loti; S. meliloti; X.fastidiosa (strain Temecula1 / ATCC 700964); X. fastidiosa; Metallo-beta-lactamase superfamily protein. (Q8UAA9); Hypothetical protein. (Q92ZB8); AGR_L_2726p. (Q7CSJ2); Hypothetical protein. (Q87AD6); Mlr2158 protein. (Q98J12); Hypothetical protein. (Q9PFB0);
GAF~Phytochrome Bradyrhizobium sp. ORS278; X. axonopodis (pv. citri); Phytochrome-like protein. (Q8PEQ2); Bacteriophytochrome. (Q8VUB6);
Glyco_hydro_6~CBM_2 Microbispora bispora; Micromonospora cellulolyticum; R. solanacearum; Thermomonospora fusca; X. fastidiosa (strain Temecula1 / ATCC 700964); X. fastidiosa; Cellulose 1,4-beta-cellobiosidase. (Q87E00); 1,4-beta-cellobiosidase. (Q9PDW2); PROBABLE EXOGLUCANASE A (1,4-BETA-CELLOBIOSIDASE) PROTEIN (EC3.2.1.91). (Q8XS97); Endoglucanase A precursor (EC 3.2.1.4) (Endo-1,4-beta-glucanase) (Cellulase). (P26414*); Endoglucanase E-2 precursor (EC 3.2.1.4) (Endo-1,4-beta-glucanase E-2)(Cellulase E-2) (Cellulase E2). (P26222*); Endo-beta-1,4-glucanase. (Q53488);
DUF811 P. aeruginosa; R. solanacearum; Hypothetical protein. (Q9I6E4*); Hypothetical protein. (Q9I6E5*); Hypothetical protein RSc3082. (Q8XUV1);
Condensation~Condensation~AMP-binding~PP-binding~Condensation~AMP-binding~PP- binding~Condensation~AMP-binding~PP- binding~Condensation~AMP-binding~PP- binding~Condensation~AMP-binding~PP- binding~Thioesterase~Thioesterase P. syringae (pv. tomato); R. solanacearum; Probable peptide synthesis protein. (Q8XS39); Non-ribosomal peptide synthetase, terminal component. (Q881Q3);
NolX R. solanacearum; Rhizobium fredii (Sinorhizobium fredii); M. loti; Rhizobium sp. (strain NGR234); X. axonopodis (pv. citri); X. axonopodis pv. glycines; X. campestris (pv. campestris); X. campestris (pv. vesicatoria); X. oryzae (pv. oryzae); HrpF protein. (Q8PBA6); HrpF protein. (Q8PQD2); HrpF. (Q83XD5); HrpF. (O33967); HrpF. (Q6F5A9); HrpF. (Q9KW22); Type III secretion system component. (Q6QJ83); SECRETED PROTEIN POPF2. (Q8XRF4); SECRETED PROTEIN POPF1. (Q8XPT2); Nodulation protein; NolX. (Q989P8); Nodulation protein nolX. (P55711); Nodulation protein NolX. (Q93LZ2); Nodulation protein NolX. (Q9EUG7); Nodulation protein nolX. (P33213);
DUF802~DUF802 R. solanacearum; X. axonopodis (pv. citri); Hypothetical protein XAC3753. (Q8PG64*); Probable transmembrane protein (Q8XQ05*);
Avirulence~Avirulence R. solanacearum; X. axonopodis (pv. citri); X. campestris (pv. citri); X. campestris (pv. vesicatoria); X. campestris; X. oryzae (pv. oryzae); X. oryzae; Avirulence protein AvrXa7-3M. (Q6GWX1); Avirulence protein AvrXa7-1M. (Q6GWX7); Avirulence protein. (Q9EZV3); Avirulence protein AvrXa7-4M. (Q6GWX4); Avirulence protein. (Q9F0D0); Hypothetical 122 kDa avirulence protein in avrBs3 region. (P14727); AvrBs3-2 protein. (Q07061); PROBABLE AVRBS3-LIKE PROTEIN. (Q8XYE3); Apl3 protein. (Q9Z3F5); Avirulence protein. (Q8PRG7); PthA protein. (Q56780); Apl1 protein. (Q9R7J3); Avirulence protein AvrXa7-2M. (Q6GWX3); Avirulence protein. (Q8PRN6); Avirulence protein AvrXa10. (Q56830); PthB. (Q7X130); Apl2 protein. (Q9Z3F6); Avirulence protein. (Q8PRM3); Avirulence protein. (Q8PRK7);
RgpF-RgpF M. loti; Rhizobium sp. (strain NGR234); X. axonopodis (pv. citri); X. campestris (pv. campestris); Mll4799 protein. (Q98D97); Hypothetical protein XAC3576. (Q8PGP0); Hypothetical protein wxcX. (O34262); Hypothetical 45.0 kDa protein y4gN. (P55470);
TPR_2~TPR_1~Sulfotransfer_1 M. loti; X. axonopodis (pv. citri); uncultured bacterium 560; TPR domain/sulfotransferase domain protein. (Q6SGF7); Mlr4028 protein. (Q98EY4); Hypothetical protein XAC3051. (Q8PI47);