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Table 2 SNP discovery results

From: Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates

  shotgun- based genotyping-based (only wild 1*) genotyping-based (wild 1, 2, 3*) total (only wild 1*) total (wild 1, 2, 3*)
BN specific 36 (7.4 %) 9 (2.5 %) 7 (1.9 %) 45 (5.3 %) 43 (5.0 %)
wild specific 77 (15.9 %) 12 (3.4 %) 30 (8.0 %) 89 (10.6 %) 107 (12.4 %)
in 35 strains, not in wild 0 204 (57.0 %) 156 (41.5 %) 204 (24.2 %) 156 (18.1 %)
in 35 strains, shared with wild 372 (76.7 %) 133 (37.1 %) 183 (48.7 %) 505 (59.9 %) 555 (64.5 %)
total 485 (100 %) 358 (100 %) 376 (100 %) 843 (100 %) 861 (100 %)
  1. * By genotyping two other wild individuals (wild 2 and 3), additional polymorphisms were identified, which could not have been found by shotgun sequencing only wild 1.