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Table 4 Haplotype analysis in 36 strains for all SNP-containing amplicons

From: Efficient single nucleotide polymorphism discovery in laboratory rat strains using wild rat-derived SNP candidates

number of haplotypes
  2 3 4 5 6 7 8 9 10 11 12  
2 SNPs 46 57 8          
3 SNPs 11 26 8 3 0 0 0      
4 SNPs 4 11 5 3 1 1 0 0 0 0 0  
5 SNPs 1 3 3 2 0 0 0 0 0 0 0  
6 SNPs 1 1 1 1 1 0 0 0 0 0 0  
7 SNPs 1 0 1 0 2 0 0 0 0 0 0  
8 SNPs 0 0 0 0 0 0 0 0 0 0 0  
9 SNPs 0 0 0 0 0 0 0 0 0 0 1  
10 SNPs 0 0 0 0 0 0 0 0 0 0 0  
11 SNPs 0 0 0 0 1 0 0 0 0 0 0  
total 64 97 27 9 5 1 0 0 0 0 1 204*
  1. *) Total number of amplicons that contains at least two SNPs. Amplicons containing no SNPs or only indels were excluded from this analysis. Amplicons containing 1 SNP are also excluded, since two-state SNPs always give rise to two haplotypes.
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