| IRGSPnr | Osgi | Hvgi | Tagi | ||||||||
---|---|---|---|---|---|---|---|---|---|---|---|---|
SSRLength | motif | prop. | count | motif | prop. | count | motif | prop. | count | motif | prop. | count |
> = 12 | CCG | 0.18 | 34238 | CCG | 0.32 | 8309 | CCG | 0.19 | 3415 | CCG | 0.20 | 6643 |
 | AG | 0.08 | 14603 | AGG | 0.10 | 2501 | AGG | 0.09 | 1536 | AGG | 0.08 | 2720 |
 | AT | 0.06 | 11594 | ACG | 0.06 | 1677 | AGC | 0.07 | 1250 | AGC | 0.07 | 2506 |
 | AGG | 0.05 | 10534 | AGC | 0.06 | 1583 | AAG | 0.04 | 730 | AAC | 0.05 | 1805 |
 | ACG | 0.04 | 7151 | AG | 0.04 | 1074 | AG | 0.04 | 714 | AG | 0.04 | 1463 |
 | AGC | 0.03 | 6576 | ACC | 0.04 | 1031 | ACG | 0.04 | 668 | AAG | 0.04 | 1305 |
 | AAG | 0.03 | 4889 | AAG | 0.04 | 994 | ACC | 0.03 | 604 | ACC | 0.03 | 1184 |
 | AAAAG | 0.02 | 4809 | ATC | 0.02 | 604 | ATC | 0.03 | 446 | ACG | 0.03 | 1162 |
 | AAAT | 0.02 | 4756 | ATCG | 0.01 | 341 | AGGGG | 0.02 | 426 | ATC | 0.02 | 758 |
 | ACC | 0.02 | 4517 | AAAG | 0.01 | 270 | AGGG | 0.02 | 391 | AC | 0.02 | 749 |
> = 14 | CCG | 0.16 | 17881 | CCG | 0.33 | 4622 | CCG | 0.18 | 1717 | CCG | 0.19 | 3270 |
 | AG | 0.09 | 10293 | AGG | 0.09 | 1277 | AGG | 0.07 | 716 | AGG | 0.07 | 1256 |
 | AT | 0.08 | 9385 | AG | 0.06 | 822 | AGC | 0.06 | 607 | AGC | 0.07 | 1190 |
 | AGG | 0.05 | 5343 | ACG | 0.06 | 776 | AG | 0.06 | 543 | AG | 0.07 | 1140 |
 | AAAAG | 0.04 | 4809 | AGC | 0.05 | 774 | AGGGG | 0.04 | 426 | AAC | 0.05 | 907 |
 | AAAAT | 0.03 | 3221 | AAG | 0.03 | 482 | AAG | 0.04 | 359 | AAG | 0.03 | 559 |
 | ACG | 0.03 | 3178 | ACC | 0.03 | 478 | ACG | 0.03 | 287 | AC | 0.03 | 530 |
 | AGC | 0.03 | 2995 | ATC | 0.02 | 273 | ACC | 0.02 | 236 | ACG | 0.03 | 479 |
 | AGAGG | 0.02 | 2627 | CCGCG | 0.02 | 249 | AC | 0.02 | 231 | ACC | 0.03 | 478 |
 | AAG | 0.02 | 2448 | AGAGG | 0.02 | 248 | CCCCG | 0.02 | 224 | ATC | 0.02 | 322 |
> = 16 | AT | 0.15 | 8334 | CCG | 0.32 | 2238 | CCG | 0.17 | 784 | CCG | 0.17 | 1452 |
 | AG | 0.14 | 7931 | AG | 0.10 | 674 | AG | 0.09 | 424 | AG | 0.11 | 951 |
 | CCG | 0.14 | 7820 | AGG | 0.09 | 643 | AGC | 0.07 | 317 | AGC | 0.07 | 560 |
 | AGG | 0.04 | 2438 | AGC | 0.05 | 354 | AGG | 0.07 | 316 | AGG | 0.06 | 542 |
 | AC | 0.03 | 1714 | ACG | 0.05 | 339 | AAG | 0.04 | 186 | AC | 0.05 | 413 |
 | AAAG | 0.03 | 1457 | AAG | 0.04 | 249 | AC | 0.04 | 175 | AAC | 0.04 | 344 |
 | AGC | 0.03 | 1421 | ACC | 0.03 | 218 | AGGG | 0.03 | 154 | AAG | 0.03 | 291 |
 | AAT | 0.02 | 1403 | AT | 0.02 | 127 | AGGGG | 0.03 | 150 | ACG | 0.03 | 221 |
 | AAAT | 0.02 | 1390 | ATC | 0.02 | 114 | ACC | 0.02 | 115 | AGGG | 0.02 | 203 |
 | ACG | 0.02 | 1345 | ATCG | 0.02 | 112 | ACG | 0.02 | 110 | ACC | 0.02 | 202 |
> = 18 | CCG | 0.19 | 7820 | CCG | 0.39 | 2238 | CCG | 0.23 | 784 | CCG | 0.23 | 1452 |
 | AT | 0.17 | 7103 | AGG | 0.11 | 643 | AG | 0.09 | 318 | AG | 0.12 | 753 |
 | AG | 0.14 | 5580 | AG | 0.09 | 503 | AGC | 0.09 | 317 | AGC | 0.09 | 560 |
 | AGG | 0.06 | 2438 | AGC | 0.06 | 354 | AGG | 0.09 | 316 | AGG | 0.09 | 542 |
 | AGC | 0.03 | 1421 | ACG | 0.06 | 339 | AAG | 0.05 | 186 | AAC | 0.05 | 344 |
 | AAT | 0.03 | 1403 | AAG | 0.04 | 249 | AGGGG | 0.04 | 150 | AAG | 0.05 | 291 |
 | ACG | 0.03 | 1345 | ACC | 0.04 | 218 | AC | 0.04 | 124 | AC | 0.04 | 267 |
 | AAG | 0.03 | 1228 | ATC | 0.02 | 114 | ACC | 0.03 | 115 | ACG | 0.04 | 221 |
 | AC | 0.03 | 1133 | AT | 0.02 | 100 | ACG | 0.03 | 110 | ACC | 0.03 | 202 |
 | AAAAG | 0.03 | 1131 | AGAGG | 0.01 | 66 | ATC | 0.02 | 83 | ATC | 0.02 | 145 |
> = 20 | AT | 0.22 | 6360 | CCG | 0.32 | 1032 | CCG | 0.16 | 383 | CCG | 0.15 | 625 |
 | AG | 0.14 | 4055 | AG | 0.12 | 385 | AG | 0.11 | 251 | AG | 0.15 | 618 |
 | CCG | 0.12 | 3431 | AGG | 0.10 | 317 | AGC | 0.07 | 170 | AGG | 0.06 | 262 |
 | AGG | 0.04 | 1190 | AGC | 0.05 | 156 | AGGGG | 0.06 | 150 | AGC | 0.06 | 250 |
 | AAAAG | 0.04 | 1131 | ACG | 0.04 | 143 | AGG | 0.06 | 139 | AAC | 0.06 | 249 |
 | AAT | 0.04 | 1121 | AAG | 0.04 | 134 | AAG | 0.04 | 101 | AC | 0.05 | 195 |
 | AC | 0.03 | 806 | ACC | 0.03 | 97 | AC | 0.04 | 85 | AAG | 0.04 | 176 |
 | AGAT | 0.02 | 693 | AT | 0.03 | 84 | ACC | 0.03 | 64 | ACC | 0.02 | 92 |
 | AAG | 0.02 | 685 | AGAGG | 0.02 | 66 | CCCCG | 0.03 | 59 | ACGAT | 0.02 | 91 |
 | AGC | 0.02 | 573 | ATC | 0.02 | 57 | AGAGG | 0.02 | 52 | ACG | 0.02 | 77 |
> = 24 | AT | 0.34 | 5501 | CCG | 0.29 | 436 | CCG | 0.19 | 180 | AG | 0.23 | 484 |
 | AG | 0.16 | 2504 | AG | 0.19 | 278 | AG | 0.18 | 171 | CCG | 0.13 | 275 |
 | CCG | 0.10 | 1574 | AGG | 0.10 | 152 | AGC | 0.10 | 93 | AAC | 0.10 | 203 |
 | AAT | 0.05 | 866 | AAG | 0.06 | 83 | AGGGG | 0.06 | 56 | AGG | 0.06 | 131 |
 | AGG | 0.04 | 615 | AGC | 0.05 | 69 | AAG | 0.05 | 48 | AC | 0.06 | 127 |
 | AC | 0.03 | 487 | ACG | 0.04 | 65 | AGG | 0.05 | 47 | AAG | 0.06 | 122 |
 | AGAT | 0.03 | 486 | AT | 0.04 | 65 | AC | 0.04 | 41 | AGC | 0.06 | 118 |
 | AAG | 0.03 | 447 | ACC | 0.03 | 48 | ACC | 0.04 | 37 | ACGAT | 0.04 | 86 |
 | AAAAG | 0.02 | 345 | ATC | 0.02 | 26 | AT | 0.03 | 25 | AT | 0.03 | 56 |
 | ACAT | 0.02 | 302 | AC | 0.01 | 21 | ATC | 0.02 | 21 | ATC | 0.02 | 39 |
> = 30 | AT | 0.54 | 4680 | AG | 0.35 | 184 | AG | 0.39 | 133 | AG | 0.42 | 368 |
 | AG | 0.15 | 1343 | CCG | 0.17 | 90 | AGGGG | 0.09 | 29 | AAC | 0.15 | 132 |
 | AAT | 0.05 | 420 | AT | 0.09 | 46 | CCG | 0.07 | 24 | AC | 0.08 | 68 |
 | CCG | 0.04 | 310 | AGG | 0.08 | 40 | AAG | 0.07 | 23 | AAG | 0.07 | 59 |
 | AGAT | 0.03 | 295 | AAG | 0.06 | 32 | AGC | 0.07 | 23 | AT | 0.05 | 42 |
 | AC | 0.03 | 280 | AGC | 0.05 | 24 | AC | 0.05 | 16 | CCG | 0.05 | 42 |
 | AAG | 0.03 | 236 | ACG | 0.03 | 16 | AT | 0.04 | 13 | AGC | 0.04 | 37 |
 | ACAT | 0.02 | 198 | ACC | 0.02 | 13 | AAC | 0.03 | 10 | AGG | 0.03 | 27 |
 | AGG | 0.02 | 176 | AAC | 0.02 | 10 | ACC | 0.03 | 9 | AAT | 0.01 | 13 |
 | AAAAG | 0.01 | 119 | AGAGG | 0.02 | 9 | CCCCG | 0.02 | 8 | ATC | 0.01 | 12 |
> = 40 | AT | 0.69 | 3631 | AG | 0.51 | 104 | AG | 0.60 | 86 | AG | 0.57 | 260 |
 | AG | 0.09 | 494 | AT | 0.14 | 29 | AGC | 0.07 | 10 | AAC | 0.14 | 62 |
 | AAT | 0.07 | 353 | AAG | 0.08 | 17 | AAG | 0.06 | 9 | AC | 0.07 | 31 |
 | AGAT | 0.04 | 192 | AGC | 0.04 | 8 | AT | 0.06 | 8 | AAG | 0.07 | 31 |
 | AC | 0.03 | 157 | CCG | 0.03 | 7 | AGGGG | 0.05 | 7 | AT | 0.06 | 26 |
 | ACAT | 0.03 | 153 | ACG | 0.03 | 6 | AAC | 0.03 | 4 | AGC | 0.03 | 14 |
 | AAG | 0.02 | 109 | AGG | 0.03 | 6 | ACC | 0.01 | 2 | ACAT | 0.01 | 5 |
 | CCG | 0.01 | 27 | AAC | 0.02 | 5 | ACAT | 0.01 | 2 | AGG | 0.01 | 3 |
 | AAC | 0.00 | 24 | ATC | 0.02 | 4 | ATC | 0.01 | 2 | CCG | 0.01 | 3 |
 | AGG | 0.00 | 19 | ACAT | 0.02 | 4 | ACT | 0.01 | 2 | AAT | 0.01 | 3 |