Table 2 Presentation of the Gene Ontology functional categories in the microarray. Table shows the numbers and frequncies of genes in the clone sets that were used for spotting (SSH – subtracted libraries, EST – normalized libraries).
From: Gene expression in the brain and kidney of rainbow trout in response to handling stress
Gene Ontology classes | N on slide | SSH | EST | Selected |
|---|---|---|---|---|
Response to external stimulus | 147 | 11 (0.07) | 48 (0.11) | 88 (0.31) |
Response to stress | 145 | 7 (0.04) | 30 (0.07) | 108 (0.38) |
Defense response | 105 | 6 (0.04) | 34 (0.08) | 65 (0.23) |
Humoral immune response | 42 | 3 (0.02) | 13 (0.03) | 26 (0.09) |
Apoptosis | 79 | 6 (0.04) | 10 (0.02) | 63 (0.22) |
Cell communication | 139 | 11 (0.07) | 45 (0.11) | 83 (0.29) |
Cell proliferation | 82 | 8 (0.05) | 23 (0.05) | 51 (0.18) |
Cell cycle | 62 | 2 (0.01) | 17 (0.04) | 43 (0.15) |
Signal transduction | 114 | 5 (0.03) | 32 (0.07) | 77 (0.27) |
Receptor activity | 49 | 3 (0.02) | 18 (0.04) | 28 (0.10) |
Intracellular signaling cascade | 49 | 3 (0.02) | 15 (0.04) | 31 (0.11) |
DNA metabolism | 47 | 5 (0.03) | 15 (0.04) | 27 (0.09) |
Transcription | 67 | 9 (0.05) | 21 (0.05) | 37 (0.13) |
Chaperone activity | 41 | 4 (0.02) | 12 (0.03) | 25 (0.09) |