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Table 2 Location by BLASTN of quail genetic map Type I markers on the chicken genome assembly

From: Integrated maps in quail (Coturnix japonica) confirm the high degree of synteny conservation with chicken (Gallus gallus) despite 35 million years of divergence

Marker Gene1 Chicken chr.2 Fragment Position3 Size (bp) Quail LG4 Chicken Chr:Mb5 E-value6
GCT1121 ABCB6 7 intron 9 113 CJA07 No hit7 -
GCT1333 BCL2 2 exon 1 237 CJA02 Chr2:67.684 2,00E-118
GCT1185 CEBPD 2 3' NC 184 CJA02 Chrun:70.609 8,50E-22
GCT1297 CKB 5 intron 2 529 CJA05 Chr5:47.115 1,70E-129
GCT1253 COPS5 2 exon 7 119 CJA02 Chrun:12.590 5,30E-27
GCT1168 EYA1 2 intron15 492 CJA02 Chr2:116.158 2,40E-174
GCT1820 FASN 18 3' NC 623 CJA18 Chr18:4.745 1,40E-229
GCT1237 GATA6 2 intron 4 170 CJA02 Chr2:101.861 9,60E-49
GCT1170 GDAP1 2 exon 3 110 CJA02 Chr2:117.706 2,40E-17
EXT0006 MOS 2 coding 468 CJA02 Chr2:110.417 1,90E-216
GCT1180 PENK 2 exon 2 314 CJA02 Chr2:110.572 1,60E-162
GCT1173 PKIA 2 3' NC 173 CJA02 Chr2:119.680 8,60E-65
EXT0007 PRKDC 2 intron12 786 CJA02 Chr2:107.114 2,20E-187
GCT1162 RGS20 2 3' NC 244 CJA02 Chr2:109.426 5,90E-78
GCT1233 ROCK1 2 intron30 179 CJA02 Chr2:101.378 3,30E-40
GCT1399 STK29 5 intron14 804 CJA05 Chr5:11.889 8,90E-247
GCT1401 TYR 1 Exon 2 188 CJA01 Chr1:179.594 3,30E-84
EXT0004 ZFP161 2 microsatellite 224 CJA02 Chr2:99.351 4,50E-81
  1. 1Corresponds to the gene name assigned by ICCARE to the chicken EST from which the primers were designed
  2. 2Determined by RH mapping [21].
  3. 3Determined by analogy to the orthologous human gene by ICCARE
  4. 4Linkage group
  5. 5Position of the quail fragment on the chicken genome sequence assembly, determined by BLASTN
  6. 6E-value of the quail-chicken alignment
  7. 7GCT1121 has a significant hit with chicken EST BI391579, that aligns with the chicken assembly at chrun:101609131–101609680