Transcriptome coexpression map of human embryonic stem cells

BMC Genomics

Table 1 The number of coexpression chromosomal domains and genes located in the domains on each chromosome, and the associated P values of by the Fishers exact test (**p value < 0.01; *p value < 0.05). The domains were identified at the coexpression index threshold 0.3 and window size 20.

Chromosome	Total genes	ES		EB
		Number of coexpression domains	Number of genes located in the domains	Number of coexpression domains	Number of genes located in the domains
1	2610	11	127	52	373
2	1748	2	40	21	130
3	1381	0	0	10	156
4	1024	7	50	0	0
5	1190	11	118**	10	99
6	1394	11	96	38*	251**
7	1378	5	95	23	186
8	927	26**	164**	17	137
9	1076	2	46	14	80
10	983	4	63	4	51
11	1692	23*	189**	55**	353**
12	1268	12	62	22	160
13	496	1	21	8	37
14	1173	8	90	9	111
15	906	5	30	5	35
16	1032	15*	188**	16	208**
17	1394	21**	198**	61**	337**
18	400	2	28	2	25
19	1592	27**	211**	98**	569**
20	710	0	0	28*	176**
21	337	0	0	3	30
22	701	0	0	14	133**
X	1141	8	59	28	174
Y	255	7*	30*	1	19

ISSN: 1471-2164