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Table 2 Genes that showed significant alterations (q ≤ 5%) in brains of scrapie-infected mice at 104 dpi

From: Gene expression alterations in brains of mice infected with three strains of scrapie

Scan Clone ID Name SAM Score(d) q-value (%) Ave. FC
L AI848245 beta-2 microglobulin* 2.0 4.2 1.3
L AI836786 complement component 1 q alpha* 2.1 4.2 1.3
L AI835314 cyclin-dependent kinase 5, regulatory subunit (p35) 1.9 4.2 1.3
L AI851280 docking protein 4 1.8 4.2 1.2
L AI854785 endogenous retrovirus, Intracisternal A particles 1.8 4.2 1.2
L SSHI-2f6 endogenous retrovirus truncated gag 1.8 4.2 1.4
L AI841933 eukaryotic translation initiation factor 3, subunit 2 (beta) 1.8 4.2 1.2
L AI836096 glial fibrillary acidic protein 3.7 4.2 1.9
L AI854206 hexosaminidase B* 2.0 4.2 1.3
L AI848012 kinesin family member 3A 1.9 4.2 1.3
L AI842053 lectin, galactoside-binding, soluble, 3 binding protein* 1.9 4.2 1.2
L AI849127 unknown EST 2.0 4.2 1.3
L AI854905 unknown EST 1.9 4.2 1.3
L AI853719 unknown EST 1.8 4.2 1.3
L SSHII-1h12 not sequenced 1.8 4.2 1.2
L AI840066 Immunoglobulin superfamily, member 4B* 1.9 4.2 1.3
L AI849299 Protein tyrosine phosphatase, receptor type Z, polypeptide 1 1.8 4.2 1.2
L AI851594 RIKEN cDNA 1300010M03 gene 1.8 4.2 1.2
L AI850724 RIKEN cDNA 2400003C14 gene 2.3 4.2 1.3
L AI843193 RIKEN cDNA E130114P18 gene 2.2 4.2 1.3
L AI840441 secretogranin III* 1.9 4.2 1.2
L AI846048 RIKEN cDNA 2900073H19 gene 1.8 4.2 1.3
  1. * Genes with an asterisk encode proteins that localize to extracellular space
  2. Clone ID is GenBank # for BMAP clones. Clone IDs that begin with SSHI are from Rashmi Korke's mouse cDNA library
  3. L stands for low scan
  4. FC stands for fold change
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