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Table 5 Chlamydial Specific Proteins with Gene Losses in Some Species

From: BLAST screening of chlamydial genomes to identify signature proteins that are unique for the Chlamydiales, Chlamydiaceae, Chlamydophila and Chlamydia groups of species

Loci and Accession Numbers Loci and Accession Numbers Loci and Accession Numbers Loci and Accession Numbers Loci and Accession Numbers Loci and Accession Numbers
Chlamydophila and Protochlamydia proteins (absent in Chlamydia) Chlamydiales specific proteins missing C. abortus Chlamydiaceae proteins, missing in C. trachomatis Chlamydiaceae proteins, missing in C. pneumoniae Chlamydiaceae proteins, missing in C. caviae Chlamydiaceae proteins, missing in C. muridarum
CCA00154 (AAP04906) CT550 (AAC68152) CCA00231 (AAP04982) CT049 (AAC67640) CT244 (AAC67837) CCA00470 (AAP05215)
CCA00168 (AAP04919)   CCA00396 (AAP05142) CT050 (AAC67641) CT277 (AAC67870) CCA00259 (AAP05010)
CCA00180 (AAP04931)   CCA00425 (AAP05171) CT051 (AAC67642)   
CCA00266 (AAP05017)   CCA00538 (AAP05281) CT214 (AAC67806)   
CCA00333 (AAP05081)   CCA00827 (AAP05568) CT867 (AAC68465)   
CCA00495 (AAP05239)   CCA00910 (AAP05649) CT868 (AAC68466)   
CCA00619 (AAP05361)      
CCA00733 (AAP05474)      
CCA00743 (AAP05484)      
CCA00855 (AAP05596)      
Loci and Accession Numbers Loci and Accession Numbers Loci and Accession Numbers Loci and Accession Number   
Chlamydiaceae proteins, missing C. abortus Chlamydophila proteins, missing C. pneumoniae Chlamydia proteins also in C. pneumoniae Chlamydiales, Rickettsiales and plastids   
CT444.1 (AAC68048) CCA00075 (AAP04827) CT785 (AAC68380) CT065 (O84068) CT495 (O84502)   
CT702 (AAC68297)    CT065 (O84068) CT495 (O84502)   
  1. These chlamydiae-specific proteins are either missing in some species from particular groups or show unexpected presence in some other groups. The E values for these proteins are not listed.