Identical probes on different high-density oligonucleotide microarrays can produce different measurements of gene expression

Zhang, LanMin; Yoder, Sean J; Enkemann, Steven A

doi:10.1186/1471-2164-7-153

Table 3 Sequence of the probes used to detect KIAA0676 protein and their location on the arrays.

From: Identical probes on different high-density oligonucleotide microarrays can produce different measurements of gene expression

	Probe sequences for KIAA0676 protein	Plus chip location		A chip location			Probe sequences for KIAA0676 protein	Plus chip location		A chip location
	206431_x_at	X	Y	X	Y		215994_x_at	X	Y	X	Y
1	ACACTTAGTCCTCCACAGTGGGTGG	360	191	527	107		CAAGTATGGGGCCCTGGCTGTGTTC	765	297	4	169
2	AAGAGTGCAAGGTCTGCCAGGTCAG	669	255	593	145	√	GTTCAAGACACTTAGTCCTCCACAG	373	707	157	437	√
3	CAGAACCTGCTGGTGCAAGCTGGGC	1105	327	588	189	√	CAGAACCTGCTGGTGCAAGCTGGGC	1104	327	586	189	√
4	TGGGCAGGTCCTGACCAACCTGCAT	924	913	60	565	√	TGGGCAGGTCCTGACCAACCTGCAT	923	913	58	565	√
5	CACAGGTCTTCATGGGCAGGGGTTG	586	309	333	175	√	CACAGGTCTTCATGGGCAGGGGTTG	585	309	331	175	√
6	ATCCTCAGGCCTGGGCTGTAGCAAG	179	51	419	29	√	ATCCTCAGGCCTGGGCTGTAGCAAG	178	51	417	29	√
7	GCTGTCTGCCCTTGGGTTCAAGAAC	85	499	180	309	√	GCTGTCTGCCCTTGGGTTCAAGAAC	84	499	178	309	√
8	ACAAGGATACCCTCACTTTGCATGA	814	193	566	111	√	ACAAGGATACCCTCACTTTGCATGA	813	193	564	111	√
9	TTAGCCCCCACATGGGGCTGCTCTT	921	1117	380	687	√	CTGACCAGTGTCCAGTGTTAGCTCC	840	395	141	235
10	GGCTGCTCTTGCTTCTACTAAAAGA	557	883	207	545	√	GGCTGCTCTTGCTTCTACTAAAAGA	558	883	205	545	√
11	TAAAACCAGACCCCCAGTGGATGTC	87	1045	596	645	√	TAAAACCAGACCCCCAGTGGATGTC	86	1045	594	645	√
	212054_x_at						212052 _s_at
1	GTTCAAGACACTTAGTCCTCCACAG	372	707	158	437	√	GCTGCCTTAGACAGATTCCCTGGGC	1122	503	45	313
2	AAGAGTGCAAGGTCTGCCAGGTCAG	668	255	592	145	√	CACCTTCCTTACACCTGGTGGGAGC	694	319	337	181
3	CAGAACCTGCTGGTGCAAGCTGGGC	1103	327	587	189	√	TATGTGGTATGGGGGTCATTCCTGC	491	1077	179	663
4	TGGGCAGGTCCTGACCAACCTGCAT	922	913	59	565	√	AAGTGATGGAACCCTCAGGTGCTCT	403	263	599	147
5	CACAGGTCTTCATGGGCAGGGGTTG	587	309	332	175	√	AGCCTGAACCTCCTGACTGAGGAAC	888	143	235	81
6	ATCCTCAGGCCTGGGCTGTAGCAAG	180	51	418	29	√	CACAGGCGTGGCTGTACACGTGCTC	157	311	554	177
7	GCTGTCTGCCCTTGGGTTCAAGAAC	83	499	179	309	√	CTCATCATCCTTTCCAGTAACTTTA	714	379	680	221
8	ACAAGGATACCCTCACTTTGCATGA	815	193	565	111	√	AAAAAACATCCCTCAGGTCCTGATA	916	219	212	123
9	TTAGCCCCCACATGGGGCTGCTCTT	922	1117	379	687	√	GGTCCTGATATATTTCCTTGGATTC	1147	821	183	507
10	GGCTGCTCTTGCTTCTACTAAAAGA	556	883	206	545	√	TTGGCTAGAAATTACACTGTGCTCA	1041	1161	505	709
11	TAAAACCAGACCCCCAGTGGATGTC	85	1045	595	645	√	TGTGCTCAATGCCTTAATAAATCCC	842	919	38	569

√ indicates that the probe is identical to another probe in this group of probesets.

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ISSN: 1471-2164

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