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Table 1 Frequency of detected SNPs with PSNPscore ≥ 0.95 in the contigs derived from all 12 genotypes used to obtain ESTs

From: Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs

Number of clones in the contig Number of contigs SNPs Cumulated length of the contigs SNPs/nucleotide site1 Cumulated length of the contigs excluding non redundant sites1 SNPs/redundant nucleotide site2
2 2911 2,158 2,554,730 1:1,184 1,536,400 1:712
3 1356 1,814 1,337,593 1:737 987,177 1:544
4 715 1,196 769,584 1:643 620,190 1:518
5 441 915 504,813 1:552 419,567 1:458
6 284 695 345,924 1:498 293,883 1:422
7 159 375 202,507 1:540 169,052 1:451
8 119 358 150,187 1:419 130,071 1:363
9 81 267 101,714 1:381 91,286 1:342
≥10 393 1,532 553,392 1:361 507,528 1:331
Total 6459 9,310 6,521,041 1:700 4,755,154 1:511
  1. 1 Sites of the contigs where only one sequence has been determined.
  2. 2 Sites of the contigs where more than one sequence has been determined.