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Table 2 The number of contigs with identifiable coding regions. ORFs were delineated based on one method (on the diagonal), based on a combination of two methods (in bold), and based on data found by both methods (in italics). The total number of snp'ed contigs was 3,590 (PSNP≥ 0.95).

From: Automated SNP detection from a large collection of white spruce expressed sequences: contributing factors and approaches for the categorization of SNPs

Method Blastx against
uniprot
e-value < e-10
Blastx against
Arabidopsis
e-value < e-10
Diogenes
Brassicaceae-trained
p-value < e-08
Diogenes
Pinaceae-trained
p-value < e-08
Blastx Uniprot
e-value < e-10
3140    
Blastx Arabidopsis
e-value < e-10
3160
3060
3080   
Diogenes
Brassicaceae-trained
p-value < e-08
3356
2607
3338
2565
2823  
Diogenes
Pinaceae-trained
p-value < e-08
3276
1929
3256
1889
2874
2014
2065