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Table 1 Identification of DtxR binding sites in the genome sequence of C. glutamicum

From: The DtxR protein acting as dual transcriptional regulator directs a global regulatory network involved in iron metabolism of Corynebacterium glutamicum

CDS1 Gene Predicted DtxR binding motif2 Distance to translational start codon3 Differential gene expression in C. glutamicum IB2103 measured by
     DNA microarray (ratio)4 Real-time RT-PCR (relative expression)5
cg0466* - TTAAGTTAGCATAGCCTTA 141 +3.2 +1160
cg0748* - ATAGGATAGGTTAACCTGA 25 +3.0 +29
cg0771* - GTCGGGCAGCCTAACCTAA 40 +5.3 +239
cg0922* - TAAGGTTTGCCTAATCTTT 30 +4.4 +176
cg0924* - TTAGGTAACCTAACCTCAC 63 +4.4 +2000
cg0926* - TTAGGTTAGGCTCTAATAT 173 +4.0 +185
cg1405* - TTTTGTTAGGCTTGCCTAG 33 +4.3 +198
cg1418* - TTAGGTAAGGTTTGCATAC 30 +1.8 +119
cg2234* - TTAGGCAAGGCTACCTTTT 4 +3.2 +1980
cg2445* hmuO GTAGGTGTGGGTAACCTAA 120 +5.6 +203
cg2782* ftn TTATGCTGCGCTAACCTAT 37 -3.3 +0.02
cg3327* dps TCAGGATAGGACAACCTAA 61 -3.4 +0.01
cg3404* - TTAGGCTATCCTAACGCAA overlap +3.2 +364
cg0160 - AATG GTTAGGCTAACCTTA overlap +3.4 +1870
cg0445 sdhCD TAAAGTAAGGCTATCCTAA 111 -2.5 +0.12
cg0527 - TTAGGCTTGCCATACCTAT 11 +3.2 +63
cg1120 ripA TGAGGTTAGCGTAACCTAC 32 +4.9 +359
cg1930 - TTAGGTAAAGCTTGCCTAT 90 +4.8 +1210
cg1996 cglIM TTAGGATTCTCTCAACTAA 199 +1.7 +3.8
cg2311 - TCAAGTAAGGTTTACCTTA overlap +3.0 +37
cg2796 - GAAGGCAAGCCAAACTTAA 18 +5.3 +1610
cg3082 - TTCTGTGAGGTTAACTTTT 254 +1.1 +19
cg3119 fpr2 TTAGGTTAGGTTCACCGTG 204 +2.2 +18
cg3156 - TAAGGCAAGCCTAAATTAG 97 +5.0 +304
cg0405 - TAAGGATAACCTTGCCTTA 28 n.d. +1010
cg0470 - TTAGGTTAAGCTAATCTAG 32 n.d. +978
cg0591 - TTAGTAAAGGCTCACCTAA 91 n.d. +310
cg0955 - TTACGTGAGCGTAGCCGAA 200 n.d. +2.8
cg1642 - TTAGGTTAGGCAAGCCATA 39 n.d. +4.4
cg3247 cgtR11 ATCAGTAAGGCTAGACTAA 87 n.d. +5.5
cg3394 - TTAAGGTAAGTTCAGCTAA 37 n.d. +4.6
cg1070 - ATAGGTTATCCAAGCCTAA 18 n.d. n.d.
cg1088 - TTAAGTCAGTGTTACCTAA 82 n.d. n.d.
cg1966 - TAACTTTGACATAACCTAA 67 n.d. n.d.
cg2224 xerC GTGTGTGAGGCAAGCCTAA 93 n.d. n.d.
cg2399 glk AAAGATTAAATTCACCTAA 29 n.d. n.d.
cg2598 - TTAGGTCAAGCTTGCATTT 20 n.d. n.d.
cg2651 - TTAGGTTGTAAAAACCTTA 46 n.d. n.d.
cg2842 phoU TTAGGTGATTCAATCTTAA 50 n.d. n.d.
cg3170 - TTAACTTTGCCCTACCTAA 190 n.d. n.d.
  1. 1 Asterisks denote genes whose upstream regions were used for initial HMM processing.
  2. 2 Bases belonging to predicted translational start codons are underlined.
  3. 3 The distance from the last nucleotide of the DtxR binding site to the translational start codon is indicated.
  4. 4 n.d., not detected as differentially expressed by using a significance cut-off of ± 1 (ratio).
  5. 5 n.d.; not detected as differentially expressed by using a significance cut-off of +2 (up-regulation) or +0.5 (down-regulation).