Table 1 Comparison of the predicted binding motifs to the biologically known motifs
From: Artificial ants deposit pheromone to search for regulatory DNA elements
Known binding sites | Consensus sequences | Predicted motifs |
|---|---|---|
AP-1 | TGAGTCAK CNTGA | CTGAC |
CREB | CGTCAN RGGC | CTGAC |
SOX9 | GGTAAC AAGA | GTAAC |
EGR-1 | WTGCGTGGGC GK | GCCCA, ACGCA |
AP-2 | GGSGGT GMNTTCC | ACCCC |
STAT | TTCCCGKAATG GM | CATTC |
SMAD3 | TGTCTG TCTCTGACSTCA | GAGAC |
E47 | VSNGCAGGTGK | CCACC |
OCT1 | TATGC AAAT | GCATA |
NFκB | GGGGATYCCCCW N | GATCC, AGGGG |