Table 3 Perturbation of TFBSs by cis-SNPs and summary gene counts where TFBS predictions are affected by cis-SNPs
Region | Total Genes Containing SNPs | CEGs Containing SNPs | Total Genes with TFBS Score Changed by SNPs | CEGs with TFBS Score Changed by SNPs | P-value (FET) |
|---|---|---|---|---|---|
NCR | 3514 | 1769 | 610 | 344 | 4.23E-04 |
Prom 2 Kb | 1569 | 863 | 94 | 61 | 0.0174 |
Prom 5 Kb | 2260 | 1220 | 193 | 111 | 0.1346 |
Cons NCR | 1476 | 782 | 129 | 66 | 0.6338 |
Cons Prom 2 Kb | 236 | 122 | 12 | 8 | 0.0852 |
Cons Prom 5 Kb | 388 | 196 | 27 | 15 | 0.2293 |