From: An overabundance of phase 0 introns immediately after the start codon in eukaryotic genes
Organism group | Vertebrata | Arthropoda | Fungi | Magnoliophyta |
---|---|---|---|---|
Total CDS with introns | 54729 | 34336 | 31441 | 95711 |
pseudogene | 1899 | 90 | 101 | 789 |
not experimental | 1204 | 515 | 504 | 9150 |
incomplete 5' end (<) | 15622 | 10583 | 11143 | 11659 |
incomplete 3' end (>) | 5417 | 1664 | 569 | 1561 |
cross-reference | 10445 | 231 | 2 | 60 |
join (complement) | 0 | 16 | 0 | 34 |
contains 'X' | 106 | 120 | 71 | 100 |
contains 'U' | 26 | 4 | 0 | 0 |
no initial 'M' | 222 | 51 | 9 | 34 |
zero or negative length | 36 | 7 | 17 | 35 |
annotated gap | 480 | 6 | 0 | 25 |
length mismatch | 466 | 19 | 11 | 18 |
Used for length statistics | 18807 | 21030 | 19014 | 72247 |
non-gt...ag | 1734 | 818 | 1159 | 3368 |
intron too short | 550 | 1244 | 2354 | 12125 |
CDS accepted | 16523 | 18968 | 15501 | 56754 |
After homology reduction | 3542 | 4179 | 4525 | 12751 |
With signal peptides | 755 | 769 | 431 | 1051 |
Without signal peptides | 2552 | 3202 | 3814 | 10370 |