Table 1 Influence of organism composition on phyletic retention performance
Organisms Present | Cumulative PPV | Number Of Genes in Group | Number of Essential Genes |
|---|---|---|---|
CMIM Selected Set Of 5 | |||
5 | 74.8% | 139 | 104 |
4 | 66.8% | 271 | 181 |
3 | 55.6% | 435 | 242 |
2 | 42.0% | 690 | 290 |
1 | 28.9% | 1302 | 376 |
0 | 16.8% | 3636 | 612 |
CMIM Selected Set of 7 | |||
7 | 77.0% | 122 | 94 |
6 | 73.3% | 206 | 151 |
5 | 65.3% | 311 | 203 |
4 | 54.1% | 455 | 246 |
3 | 43.0% | 633 | 272 |
2 | 34.8% | 952 | 331 |
1 | 25.1% | 1613 | 405 |
0 | 16.8% | 3636 | 612 |
Set of 27 Non-parasitic Gamma Proteobacteria | |||
27 | 59.0% | 305 | 180 |
24 | 46.6% | 545 | 254 |
20 | 34.5% | 861 | 297 |
16 | 27.3% | 1247 | 341 |
12 | 23.9% | 1697 | 405 |
8 | 20.3% | 2235 | 453 |
4 | 18.3% | 2845 | 521 |
Set of 179 prokaryotes | |||
179 | 75.0% | 12 | 9 |
161 | 75.3% | 77 | 58 |
143 | 64.8% | 196 | 127 |
126 | 54.4% | 294 | 160 |
108 | 48.4% | 419 | 203 |
90 | 39.7% | 572 | 227 |
72 | 33.0% | 817 | 270 |
54 | 26.8% | 1172 | 314 |
37 | 22.4% | 1659 | 371 |
19 | 19.2% | 2379 | 457 |
1 | 17.0% | 3516 | 596 |