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Table 4 Definitions of highly conserved and lineage-specific elements

From: Evolution and comparative analysis of the MHC Class III inflammatory region

Reference Species

Class name

Label

Definition

Any

Highly Conserved Element

HCE

Minimum % identity > 90%*

Tammar wallaby

Marsupial-Specific Element

MSE

Average marsupial % identity < 80%

Maximum eutherian % identity < 20%

Tammar wallaby

Unidentified in Opossum

UIO

Opossum % identity <10%

Average eutherian % identity > 50%

Human

Eutherian-Specific Element

ESE

Average eutherian % identity > 80%

Maximum marsupial % identity < 20%

  1. *relative to reference sequence