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Table 2 Xq28-mapped diseases and favoured candidate genes.

From: The systematic functional characterisation of Xq28 genes prioritises candidate disease genes

OMIM ID

Disease linked to Xq28

Candidate region

Potential affected tissues

Candidate genes

311510

PARKINSONISM, EARLY-ONSET, WITH MENTAL RETARDATION;

WAISMAN SYNDROME (WSN)

DXS1684-Xqter

brain: substantia nigra, basal ganglia, white matter,

frontal cortex, adrenal glands

ATP6AP1, STK23, NSDHL, HCFC1, RPL10, PDZK4, SLC6A8, IDH3G, BCAP31, IRAK1, HCBP6, IKBKG

314400

CARDIAC VALVULAR DYSPLASIA, X-LINKED (CVD1)

DXS8011-Xqter

heart: myocardium, valves, joints, cartilage

STK23

309541

MENTAL RETARDATION, X-LINKED 3 (MRX3)

DXS52-Xqter

brain

HCFC1, SLC6A8, ATP6AP1, IDH3G, BCAP31, STK23, PDZK4, IRAK1, RPL10, IKBKG, HCBP6

310440

MYOPATHY, X-LINKED, WITH EXCESSIVE AUTOPHAGY (XMEA)

DXS8103-DXS1108

peripheral nervous system, muscle

STK23

314300

TORTICOLLIS, KELOIDS, CRYPTORCHIDISM,

AND RENAL DYSPLASIA (TKCR)

G6PD-Xqter

brain, testis, embryo: kidney

ATP6AP1, NSDHL, RPL10, FAM3A

310460

MYOPIA 1 (MYP1)

F8-Xqter

brain: midbrain, brain stem,

eye: retina, lens

NSDHL, BGN

300261

ARMFIELD X-LINKED MENTAL RETARDATION

SYNDROME (MRXSA)

Xq28

brain, embryo: skeleton

IDH3G, RPL10, SSR4, PDZK4

300260

LUBS X-LINKED MENTAL RETARDATION

SYNDROME (MRXSL)

DXS8103- 5CM

brain, muscle

STK23

309620

MENTAL RETARDATION, SKELETAL DYSPLASIA,

AND ABDUCENS PALSY;

CHRISTIAN SYNDROME (CHRS)

DXS52-DXS15

brain, joints, cartilage, spinal cord,

embryo: skeleton, pancreas, liver

NSDHL

300048

INTESTINAL PSEUDOOBSTRUCTION, NEURONAL,

CHRONIC IDIOPATHIC, X-LINKED (IPOX)

DXS15-DXS1108

intestinal tract: innervation, wall,

colon, blood, embryo

RPL10, FLNA, RENBP, ATP6AP1,

300388

POLYMICROGYRIA, BILATERAL PERISYLVIAN (BPP)

DXS8103-Xqter

brain: hippocampus, midbrain, brain stem,

temporal cortex, parietal cortex

BCAP31, IDH3G, HCFC1, IKBKG, SLC6A8, PDZK4,

300321

FG SYNDROME 2 (FGS2)

Xq28

brain: white matter, motor cortex, stem ganglia,

corpus callosum, central

and peripheral nervous system, embryo: brain

IDH3G, CD99L2, FAM11A,

300244

TERMINAL OSSEOUS DYSPLASIA AND PIGMENTARY DEFECTS (ODPD)

Xq27.3-q28

bone, eye, skin,

SSR4 , RPL10, BGN

300271

MENTAL RETARDATION, X-LINKED 72 (MRX72)

DXS1073-F8c

brain

no gene with matched expression pattern

is located within or near linkage area

301590

ANOPHTHALMOS, CLINICAL (ANOP1)

Xq27-q28

bony orbits, brain, skin

HCFC1, ATP6AP1, CD99L2, IDH3g, PDZK4, FAM11A

309200

MAJOR AFFECTIVE DISORDER 2 (MAFD2)

Xq28

brain

HCFC1, SLC6A8, ATP6AP1, CD99L2, IDH3G, PDZK4, FAM11A

309800

MICROPHTHALMIA WITH ASSOCIATED ANOMALIES (MAA)

Xq27-q28

eye, bone, urogenital, heart, teeth

SSR4, RPL10, IDH3g, STK23

  1. Columns one and two list those Xq28-mapped diseases, for which the causative gene has not yet been identified. Flanking genetic markers of disease regions are shown in the third column. Potentially affected tissues (column four) have been selected according to phenotypic descriptions within the OMIM database. Column five lists candidate genes that have been identified by matching affected tissues with RNA in situ hybridisation patterns using the query options of our web-accessible database, and combining with information on the chromosomal location of the genes and diseases. Genes with best matches are shown in bold.