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Table 2 Comparisons between VNTRfinder and the method described by Denoeud and Vergnaud.

From: Tools for the identification of variable and potentially variable tandem repeats

Mycobacterium tuberculosis(99.3% identical) Neisseria meningitidis(48.74% identical)
  Total % Denoeud aligned TRs aligned by VNTRfinder % of Denoeud VNTRs called by VNTRfinder as variant or non-variant % of Denoeud non-variants called by VNTRfinder as variant or non-variant   Total % Denoeud aligned TRs aligned by VNTRfinder % of Denoeud VNTRs called by VNTRfinder as variant or non-variant % of Denoeud non-variants called by VNTRfinder as variant or non-variant
Denoeud v. 40, 10, all variants Denoeud v. 40, 10, all variants
total repeats matched 10860 86.59    total repeats matched 3533 82.18   
DEN+, VNTRfinder+ * 72   94.7   DEN+, VNTRfinder+ 69   81.2  
DEN+, VNTRfinder- 4   5.3   DEN+, VNTRfinder- 16   18.8  
DEN-, VNTRfinder+ 0    0 DEN-, VNTRfinder+ 2    0
DEN-, VNTRfinder- 10784    100 DEN-, VNTRfinder- 3446    100
Denoeud v. 40, 10, multiple of unit Denoeud v. 40, 10, multiple of unit
total repeats matched 10160 81.01    total repeats matched 1615 37.57   
DEN+, VNTRfinder+ 39   92.9   DEN+, VNTRfinder+ 9   75.0  
DEN+, VNTRfinder- 3   7.1   DEN+, VNTRfinder- 3   25.0  
DEN-, VNTRfinder+ 0    0 DEN-, VNTRfinder+ 0    0
DEN-, VNTRfinder- 10118    100 DEN-, VNTRfinder- 1603    100
  1. * '+/-' indicate repeats reported as variants/non-variants.
  2. Repeats were matched between the results reported by VNTRfinder and those reported by the method of Denoeud and Vergnaud.