Table 1 Genotyped polymorphisms
From: Comparison of PrASE and Pyrosequencing for SNP Genotyping
Gene (alternative name) | Abbreviation | DbSNP number | Polymorphism position (nt) | PrASE amplicon lenght | PrASE amplicon GC content |
|---|---|---|---|---|---|
serpin peptidase inhibitor, clade E (plasminogen activator inhibitor type 1), member 1 | SERPINE1 | rs1799768 | -675 (4G/5G) | 48/49 | 0.61 |
nitric oxide synthase 3 | NOS3 | rs1799983 | 894 (G/T) | 48 | 0.64 |
5,10-methylenetetrahydrofolate reductase | MTHFR | rs1801133 | 667 (C/T) | 53 | 0.48 |
integrin, beta 3 (platelet glycoprotein IIIa) | ITGB3 | rs5918 | 196 (T/C) | 49 | 0.62 |
fibrinogen beta chain | FGB | rs1800791 | -854 (G/A) | 56 | 0.38 |
coagulation factor XIII, A1 polypeptide | F13A1 | rs5985 | 163 (G/T) | 46 | 0.69 |
coagulation factor VII | F7 | rs510317 | -402 (G/A) | 56 | 0.40 |
coagulation factor V | F5 | rs6025 | 1691 (G/A) | 54 | 0.45 |
coagulation factor II (thrombin) | F2 | rs1799963 | 20210 (G/A) | 53 | 0.48 |
matrix metallopeptidase 3 (stromelysin 1) | MMP3 | rs3025058 | -1675 (5T/6T) | 57/58 | 0.42 |