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Table 5 Comparison of M. grisea transcriptomes measured by MPSS, RL-SAGE and oligoarray approaches.

From: Deep and comparative analysis of the mycelium and appressorium transcriptomes of Magnaporthe grisea using MPSS, RL-SAGE, and oligoarray methods

Technology Comparison Correlation coefficient using all tags Correlation coefficient using only significant tags Correlation coefficient using tags ≥ 10 copies Correlation coefficient using tags ≥ 25 copies
Appressoria: MPSS vs microarray 1 0.59 0.60 0.65 0.69
Appressoria: MPSS vs microarray 2 0.67 0.70 0.74 0.77
Mycelia: MPSS vs microarray 1 0.17 0.16 0.18 0.16
Mycelia: MPSS vs microarray 3 0.49 0.49 0.51 0.51
Mycelia: RL-SAGE vs microarray 1 0.2 0.19 0.29 -0.29
Mycelia: RL-SAGE vs microarray 4 0.31 0.33 0.64 0.43
Mycelia: MPSS vs RL-SAGE 1 0.068 NA NA NA
Mycelia: MPSS vs RL-SAGE 5 0.4 NA NA NA
  1. 1Correlation before removing genes.
  2. 2Correlation after removing 4 genes out of 1729 genes (Standard residuals range ≤ -5.7 to ≥ 9.4).
  3. 3Correlation after removing 10 genes out of 914 genes (Standard residuals range ≤ -1.75 to ≥ 5.3).
  4. 4 Correlation after removing 14 genes out of 883 genes (Standard residuals range ≤ -1.75 to ≥ 5.3).
  5. 5 Correlation after removing 18 genes out of 276 genes (Standard residuals range ≤ -0.45 to ≥ 2.8). NA-Not available.