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Table 6 Candidate rearrangement elements (TB1–4) identified within the Tapasin-BRD2 segment

From: The major histocompatibility complex (Mhc) class IIB region has greater genomic structural flexibility and diversity in the quail than the chicken

Name

Features and sequence of repeat unit

Quail

Chicken

  

HT1

HT2

HT3

HT4

HT5

B12

B21

 

TCF-I [37]

       

TB1

MAMAGn

13*

13

26

27

23

3

3

 

STRs in H-2 class II region [38]

       

TB2

CAGAn

86

54

>14

Un

56

5

5

TB3

CAGGn

120

75

>21

Un

99

6

6

 

Recombination hotspot motif [39]

       

TB4

GGGCAGGARGn

9

4

>1

Un

5

1

1

 

Total

228

146

>62

>27

183

15

15

  1. * number of repeat units.